PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

Kalax.0092s0102.1.p

Organism

Kalanchoe marnieriana

Taxonomic ID

80907

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; Saxifragales; Crassulaceae; Kalanchoe

Family

GRAS

Protein Properties

Length: 660aa MW: 72604.3 Da PI: 5.7999

Description

GRAS family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
Kalax.0092s0102.1.p	genome	JGI	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	GRAS	275.5	1.7e-84	294	657	3	373
GRAS 3 elLlecAeavssgdlelaqalLarlselaspdgdpmqRlaayfteALaarlarsvsel..ykalppsetsekn......sseelaalklf 84 e++++ Ae +s+g+l laq +Larl+++ sp g+p+qR+a yf+e L+ l+ s+++l +a+++s++ + + + +l a+k f Kalax.0092s0102.1.p 294 EQIFKSAELLSTGNLVLAQGILARLNHQLSPIGKPLQRVAYYFKESLQLLLLLSSNNLdvNSAVTASTALS-SfsppvsLILKLGAFKSF 382 689999*****************************************99887555541144444443332.24677667788888999 PP GRAS 85 sevsPilkfshltaNqaIleavegeervHiiDfdisqGlQWpaLlqaLasRp..egppslRiTgvgspesgskeeleetgerLakfAeel 172 se+sP+++f+++t+NqaIleave ++r+H+iDfdi++G+QW++++q+La R+ +g sl+iT+++s s + e+ ++e L+ fAeel Kalax.0092s0102.1.p 383 SEISPVVQFANFTCNQAILEAVEMHDRIHVIDFDIGYGGQWASFMQELALRNssGGVISLKITAFVS--SYDDIEIGLIQESLRLFAEEL 470 **************************************************767778*****..55999************ PP GRAS 173 gvpfefnvlvakrledleleeLrvkpgEalaVnlvlqlhrlldesvsleserdevLklvkslsPkvvvvveqeadhnsesFlerfleale 262 +v+++ +v+ ++ l+ + v gEa+aVnl + + + ++l+ vL+ +k+lsPk+vv e+ +d+ + +F++ +++a+e Kalax.0092s0102.1.p 471 NVDLDVKVF---GFDLLNSVSHFVGDGEAVAVNLPIGILYNC--GLPLPF----VLRSIKQLSPKIVVTLERGCDRYDLPFAHNMIQAVE 551 ****8...88888777777999******877665..566666....******************************** PP GRAS 263 yysalfdsleaklpreseerikvErellgreivnvvacegaerrerhetlekWrerleeaGFkpvplsekaakqaklllrkvksdgyrve 352 ys l++sl+a +s+ +k+Er++++++i+ +v ++ + + t Wr + ++ F+p+ ls+++++q ++l++++ ++g+++e Kalax.0092s0102.1.p 552 SYSNLLESLDAV-NGNSDIVQKMERFMIHPAIERLVLQRFRV----QDTSPPWRTFFISSSFTPLLLSNFNESQGECLVQRTMVHGFHLE 636 *****887.68999**************987776....8899************************************ PP GRAS 353 eesgslvlgWkdrpLvsvSaW 373 +++ slvl+W++++L+s++aW Kalax.0092s0102.1.p 637 KKRSSLVLCWQQKELISATAW 657 ******************* PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
PROSITE profile	PS50985	38.274	266	638	IPR005202	Transcription factor GRAS
Pfam	PF03514	5.7E-82	294	657	IPR005202	Transcription factor GRAS

Sequence ? help Back to Top
Protein Sequence Length: 660 aa Download sequence Send to blast
MPLPFDFQGK PNLQQQHQLL GFFPQDLIAT EQQLQWSHAK AEETALSRYV GREPTSVLDP 60 RRSPSPPHSS ATLSSSLGSS ASGGGGRKAR NYNVEFDQSM FGFILNDNSD ASIDDPSGLG 120 KLISAAPVTP SDLDSLGAIY HHPQHQTGDE FGAFSGNLRE SGFGSGQGSI FGQLGNNIVG 180 NSCIESLFNQ QQQLQHQTTK SLINHHQPSQ SPSLFLPGGF SDQPIFHLPN PKRLNTRPAL 240 DSEQQNQIEK NQFLAQNQLQ MQASMMPASA ACKKMLQSDG TVEEMGLQQQ ALFEQIFKSA 300 ELLSTGNLVL AQGILARLNH QLSPIGKPLQ RVAYYFKESL QLLLLLSSNN LDVNSAVTAS 360 TALSSFSPPV SLILKLGAFK SFSEISPVVQ FANFTCNQAI LEAVEMHDRI HVIDFDIGYG 420 GQWASFMQEL ALRNSSGGVI SLKITAFVSS YDDIEIGLIQ ESLRLFAEEL NVDLDVKVFG 480 FDLLNSVSHF VGDGEAVAVN LPIGILYNCG LPLPFVLRSI KQLSPKIVVT LERGCDRYDL 540 PFAHNMIQAV ESYSNLLESL DAVNGNSDIV QKMERFMIHP AIERLVLQRF RVQDTSPPWR 600 TFFISSSFTP LLLSNFNESQ GECLVQRTMV HGFHLEKKRS SLVLCWQQKE LISATAWGC*

Sequence ? help Back to Top

Protein Sequence Length: 660 aa Download sequence Send to blast

MPLPFDFQGK PNLQQQHQLL GFFPQDLIAT EQQLQWSHAK AEETALSRYV GREPTSVLDP  60
RRSPSPPHSS ATLSSSLGSS ASGGGGRKAR NYNVEFDQSM FGFILNDNSD ASIDDPSGLG  120
KLISAAPVTP SDLDSLGAIY HHPQHQTGDE FGAFSGNLRE SGFGSGQGSI FGQLGNNIVG  180
NSCIESLFNQ QQQLQHQTTK SLINHHQPSQ SPSLFLPGGF SDQPIFHLPN PKRLNTRPAL  240
DSEQQNQIEK NQFLAQNQLQ MQASMMPASA ACKKMLQSDG TVEEMGLQQQ ALFEQIFKSA  300
ELLSTGNLVL AQGILARLNH QLSPIGKPLQ RVAYYFKESL QLLLLLSSNN LDVNSAVTAS  360
TALSSFSPPV SLILKLGAFK SFSEISPVVQ FANFTCNQAI LEAVEMHDRI HVIDFDIGYG  420
GQWASFMQEL ALRNSSGGVI SLKITAFVSS YDDIEIGLIQ ESLRLFAEEL NVDLDVKVFG  480
FDLLNSVSHF VGDGEAVAVN LPIGILYNCG LPLPFVLRSI KQLSPKIVVT LERGCDRYDL  540
PFAHNMIQAV ESYSNLLESL DAVNGNSDIV QKMERFMIHP AIERLVLQRF RVQDTSPPWR  600
TFFISSSFTP LLLSNFNESQ GECLVQRTMV HGFHLEKKRS SLVLCWQQKE LISATAWGC*

3D Structure ? help Back to Top

PDB ID	Evalue	Query Start	Query End	Hit Start	Hit End	Description
5b3g_A	9e-27	298	657	25	378	Protein SCARECROW
5b3h_A	9e-27	298	657	24	377	Protein SCARECROW
5b3h_D	9e-27	298	657	24	377	Protein SCARECROW
Search in ModeBase

Regulation -- PlantRegMap ? help Back to Top
Source	Upstream Regulator	Target Gene
PlantRegMap	Retrieve	-

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_010661679.1	1e-160	PREDICTED: scarecrow-like protein 27
TrEMBL	A0A438GXI9	1e-160	A0A438GXI9_VITVI; Scarecrow-like protein 6
STRING	VIT_15s0048g00270.t01	1e-159	(Vitis vinifera)

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT4G00150.1	1e-115	GRAS family protein

Link Out ? help Back to Top
Phytozome	Kalax.0092s0102.1.p