PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Kalax.0092s0008.1.p
Organism
Kalanchoe marnieriana
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; Saxifragales; Crassulaceae; Kalanchoe
Family bHLH
Protein Properties Length: 273aa    MW: 30377.6 Da    PI: 8.9762
Description bHLH family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Kalax.0092s0008.1.pgenomeJGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1HLH42.51.1e-1366114355
                          HHHHHHHHHHHHHHHHHHHHHHCTSCCC...TTS-STCHHHHHHHHHHHHHHH CS
                  HLH   3 rahnerErrRRdriNsafeeLrellPkaskapskKlsKaeiLekAveYIksLq 55 
                          ++h e+ErrRR+riN  +++Lr+llP++    ++K++Ka+ L ++++ +k+Lq
  Kalax.0092s0008.1.p  66 KNHREAERRRRERINAHLATLRSLLPSN----NRKMDKAALLAEVINGVKDLQ 114
                          58*************************9....9*****************998 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS5088815.36463113IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
SuperFamilySSF474592.62E-1466123IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
PfamPF000105.5E-1166114IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
Gene3DG3DSA:4.10.280.103.5E-1467122IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
SMARTSM003533.1E-1269119IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
CDDcd000839.99E-476115No hitNo description
CDDcd048735.36E-5158217No hitNo description
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0046983Molecular Functionprotein dimerization activity
Sequence ? help Back to Top
Protein Sequence    Length: 273 aa     Download sequence    Send to blast
MECRLRGEEL ECAKRFDPFE VEPGGAGDGE EVVADSGDEE MVKCLGKRRK NKKKVAISHI  60
AAVALKNHRE AERRRRERIN AHLATLRSLL PSNNRKMDKA ALLAEVINGV KDLQEHARRV  120
SEGLLMPMDA DELTVEPLSN ESENGAVTFK ASLCCDLRPD LFADLRQAIG SLRLKTLRSE  180
ISTLGERVKT LFILSSHNDV NDTGAQKNLA NAILQALSSV LYKPSPLPEY SLRTTLSQKR  240
FRASFEDYSS PRSVLSHKRF KYSFFESSSS SA*
Nucleic Localization Signal ? help Back to Top
NLS
No. Start End Sequence
14452LGKRRKNKK
27176ERRRRE
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_021596197.13e-58transcription factor bHLH30-like isoform X1
TrEMBLA0A2C9UAB86e-57A0A2C9UAB8_MANES; Uncharacterized protein
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT1G68810.14e-29bHLH family protein