PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Kalax.0091s0083.1.p
Organism
Kalanchoe marnieriana
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; Saxifragales; Crassulaceae; Kalanchoe
Family TALE
Protein Properties Length: 441aa    MW: 48639.8 Da    PI: 8.9016
Description TALE family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Kalax.0091s0083.1.pgenomeJGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1Homeobox28.91.9e-092973341954
                          HHH..SSS--HHHHHHHHHHCTS-HHHHHHHHHHHHHH CS
             Homeobox  19 Fek..nrypsaeereeLAkklgLterqVkvWFqNrRak 54 
                          Fe   ++yps +++  LA+++gL+ +qV++WF N R +
  Kalax.0091s0083.1.p 297 FEHflHPYPSDTDKNLLAQRTGLSRNQVSNWFINARVR 334
                          554459******************************88 PP
2BELL721e-23170233770
                 BELL   7 kkkakLlslleeVdkrYkqyveqlqtvissFeavaglgsakpYtslAlkaiSrhFrcLkdaiae 70 
                          +k + L+ ll+eV kr kqy++ lq v++sFe+v glg+a+pYt +Al +++++FrcLk  i e
  Kalax.0091s0083.1.p 170 NKDSSLILLLDEVFKRCKQYCQHLQSVVASFETVPGLGNAAPYTYFALGTMAQQFRCLKKTIFE 233
                          68899*******************************************************9987 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SMARTSM005744.2E-25115233IPR006563POX domain
PfamPF075267.8E-26120231IPR006563POX domain
CDDcd000861.04E-10278338No hitNo description
SMARTSM003891.4E-7278342IPR001356Homeobox domain
Gene3DG3DSA:1.10.10.602.4E-25281342IPR009057Homeodomain-like
SuperFamilySSF466892.35E-15282342IPR009057Homeodomain-like
PfamPF059202.7E-18295334IPR008422Homeobox KN domain
PROSITE profilePS5007111.774297338IPR001356Homeobox domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0003677Molecular FunctionDNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 441 aa     Download sequence    Send to blast
MESSTSSVPP PPKRYKLPLH PPPAAITTSP PPPHHDRHPT DSLRNLISTR QPTPLGSTPF  60
STSSLCSGPA RPRDLAHGGL SLSLSSDLPR RIGRDSPVGA HEAWRGSAVP LGPFTGYASI  120
LSRSRFLKPA QDLLDELCGV DWRPVNRSSF HGFCDSAGIV SMDLDDVAGN KDSSLILLLD  180
EVFKRCKQYC QHLQSVVASF ETVPGLGNAA PYTYFALGTM AQQFRCLKKT IFERARVVGE  240
AIGYEAVNSV TLGCREPHQS SENWKPVQTS PSLQHPVWRS QRGLPAHAVT VFKNWLFEHF  300
LHPYPSDTDK NLLAQRTGLS RNQVSNWFIN ARVRLWKPLV EEIHTLDEQR GQPADPKSSK  360
RRTPTLSFDH PTRDFDLPML PGQQRQERRN PSCSESYTDN LSTSASKHSR TEENIGISLA  420
LGLQQESGLG NPASHGAFNL *
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
4xrm_A3e-14284342563Homeobox protein Meis2
4xrm_B3e-14284342563Homeobox protein Meis2
Nucleic Localization Signal ? help Back to Top
NLS
No. Start End Sequence
1355361PKSSKRR
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
STRINGVIT_13s0019g02450.t011e-82(Vitis vinifera)
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT5G02030.12e-65TALE family protein