PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Kalax.0091s0025.1.p
Organism
Kalanchoe marnieriana
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; Saxifragales; Crassulaceae; Kalanchoe
Family B3
Protein Properties Length: 359aa    MW: 40592.2 Da    PI: 9.4917
Description B3 family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Kalax.0091s0025.1.pgenomeJGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1B346.18.8e-15785687
                         ..-HHHHTT-EE--HHH.HTT---..--SEEEEEETTS-EEEEEE..EEETTE.EEE-TTHHHHHHHHT--TT-EEEEEE-SS CS
                   B3  6 tpsdvlksgrlvlpkkfaeehggkkeesktltledesgrsWevkliyrkksgr.yvltkGWkeFvkangLkegDfvvFkldgr 87
                         +++d ++++ l lp +f e++g k ++   ++l+ ++g +W+v++  +k+s+  ++l++GW +F+++ g+k g f+vF +d  
  Kalax.0091s0025.1.p  7 VTADITTRSKLKLPGRFGERCGAKVPG--NVRLQVPTGATWRVEV--KKNSNDrVWLGEGWFKFAESLGVKYGHFLVFDYDAV 85
                         6789999999***********888666..6***************..5555555*************************9864 PP
2B369.16e-22258350599
                          -..-HHHHTT-EE--HHH.HTT.---..--SEEEEEETTS-EEEEEE..EEETTEEEE-TTHHHHHHHHT--TT-EEEEEE-SSSEE..E CS
                   B3   5 ltpsdvlksgrlvlpkkfaeeh.ggkkeesktltledesgrsWevkliyrkksgryvltkGWkeFvkangLkegDfvvFkldgrsefelv 93 
                          ++p+ + ++++l +p +f+e++ ++k  +  + tl++ +gr+W+vk++  +++ r ++t GW +Fv++ngL++gD+++F+l++  e   +
  Kalax.0091s0025.1.p 258 ESPAGTARQCQLLVPMPFIEAYfNLK-IN--DATLRTDDGRKWSVKYRLARYRPRSYFTYGWTQFVRDNGLRAGDVCLFELIRGAENAIK 344
                          567778899*************6444.33..79****************99999999*************************98666689 PP

                          EEEE-S CS
                   B3  94 vkvfrk 99 
                          v +fr+
  Kalax.0091s0025.1.p 345 VVIFRA 350
                          988885 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS5086312.252297IPR003340B3 DNA binding domain
SuperFamilySSF1019365.3E-16394IPR015300DNA-binding pseudobarrel domain
Gene3DG3DSA:2.40.330.108.9E-16396IPR015300DNA-binding pseudobarrel domain
SMARTSM010196.1E-10397IPR003340B3 DNA binding domain
CDDcd100171.39E-15391No hitNo description
PfamPF023622.4E-12787IPR003340B3 DNA binding domain
Gene3DG3DSA:2.40.330.104.8E-22238349IPR015300DNA-binding pseudobarrel domain
CDDcd100171.94E-22244349No hitNo description
SMARTSM010197.0E-18254351IPR003340B3 DNA binding domain
PROSITE profilePS5086315.439254351IPR003340B3 DNA binding domain
PfamPF023626.2E-20256350IPR003340B3 DNA binding domain
SuperFamilySSF1019362.35E-20264350IPR015300DNA-binding pseudobarrel domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0003677Molecular FunctionDNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 359 aa     Download sequence    Send to blast
MKFYRIVTAD ITTRSKLKLP GRFGERCGAK VPGNVRLQVP TGATWRVEVK KNSNDRVWLG  60
EGWFKFAESL GVKYGHFLVF DYDAVRAVFH VVAIGMSAVE TEYPTVSSID DDDDQDQSGR  120
NPRLSNLKRR KIEKDDDDDD DNVVILKDDA NLGRSKPQKC QAPGKKAKAS KYEVDQSMCG  180
NGSVRSDDGD LTTTKKRGKF EREIILNRER MIQCIVQGRG INNRANDQAE KAIERAKSFK  240
AYEPVFIIAL SPCYVTLESP AGTARQCQLL VPMPFIEAYF NLKINDATLR TDDGRKWSVK  300
YRLARYRPRS YFTYGWTQFV RDNGLRAGDV CLFELIRGAE NAIKVVIFRA ISDDEAVK*
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT3G18990.13e-25B3 family protein