PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | Kalax.0088s0053.1.p | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; Saxifragales; Crassulaceae; Kalanchoe
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Family | ERF | ||||||||
Protein Properties | Length: 208aa MW: 23190.1 Da PI: 6.4199 | ||||||||
Description | ERF family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | AP2 | 52.1 | 1.7e-16 | 20 | 68 | 3 | 55 |
AP2 3 ykGVrwdkkrgrWvAeIrdpsengkrkrfslgkfgtaeeAakaaiaarkkleg 55 y+GVr ++ +g+Wv+eIr p++ r r++lg+f ae+Aa+a++ a ++++g Kalax.0088s0053.1.p 20 YRGVRMRS-WGKWVSEIRQPRK---RSRVWLGTFPNAEMAARAHDVASLAFKG 68 9****998.**********954...5*******************99888776 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
Pfam | PF00847 | 8.4E-11 | 18 | 67 | IPR001471 | AP2/ERF domain |
PROSITE profile | PS51032 | 22.827 | 19 | 76 | IPR001471 | AP2/ERF domain |
SuperFamily | SSF54171 | 1.5E-20 | 19 | 77 | IPR016177 | DNA-binding domain |
Gene3D | G3DSA:3.30.730.10 | 8.2E-31 | 19 | 77 | IPR001471 | AP2/ERF domain |
SMART | SM00380 | 4.1E-36 | 19 | 82 | IPR001471 | AP2/ERF domain |
CDD | cd00018 | 4.49E-30 | 20 | 78 | No hit | No description |
PRINTS | PR00367 | 3.9E-10 | 20 | 31 | IPR001471 | AP2/ERF domain |
PRINTS | PR00367 | 3.9E-10 | 42 | 58 | IPR001471 | AP2/ERF domain |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0006355 | Biological Process | regulation of transcription, DNA-templated | ||||
GO:0003677 | Molecular Function | DNA binding | ||||
GO:0003700 | Molecular Function | transcription factor activity, sequence-specific DNA binding |
Sequence ? help Back to Top |
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Protein Sequence Length: 208 aa Download sequence Send to blast |
MAEYVSNIRA KEERRGAPAY RGVRMRSWGK WVSEIRQPRK RSRVWLGTFP NAEMAARAHD 60 VASLAFKGKS AHLNFPHLVP HLPQPASLLP SHIRAAASKA AAMTHLTSCP PKQVKPADDH 120 SPAEAVMSWS GDQEAQQGSY WNEMGSELVE LPSLAESEAL QSCVWDELRI MDSGGWWVWE 180 DMHDIDRFGY LNEVIGSVVV DEDHTGF* |
3D Structure ? help Back to Top | ||||||
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PDB ID | Evalue | Query Start | Query End | Hit Start | Hit End | Description |
5wx9_A | 3e-16 | 20 | 77 | 15 | 73 | Ethylene-responsive transcription factor ERF096 |
Search in ModeBase |
Functional Description ? help Back to Top | ||||||
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Source | Description | |||||
UniProt | Probably acts as a transcriptional activator. Binds to the GCC-box pathogenesis-related promoter element. May be involved in the regulation of gene expression by stress factors and by components of stress signal transduction pathways (By similarity). {ECO:0000250}. |
Regulation -- PlantRegMap ? help Back to Top | ||||||
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Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | - |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Swissprot | Q9M080 | 6e-41 | ERF43_ARATH; Ethylene-responsive transcription factor ERF043 |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT4G32800.1 | 1e-38 | ERF family protein |
Link Out ? help Back to Top | |
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Phytozome | Kalax.0088s0053.1.p |
Publications ? help Back to Top | |||
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