PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Kalax.0085s0050.1.p
Organism
Kalanchoe marnieriana
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; Saxifragales; Crassulaceae; Kalanchoe
Family ERF
Protein Properties Length: 243aa    MW: 26839.7 Da    PI: 6.4433
Description ERF family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Kalax.0085s0050.1.pgenomeJGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1AP2569.8e-1893143154
                  AP2   1 sgykGVrwdkkrgrWvAeIrdpsengkrkrfslgkfgtaeeAakaaiaarkkle 54 
                          s y GVr ++ +g+++AeIrd + ng  +r++lg+f+tae Aa a+++a+++ +
  Kalax.0085s0050.1.p  93 SPYVGVRKRP-WGKFAAEIRDSTRNG--ARVWLGTFDTAESAALAYDQAALASR 143
                          689*******.**********44465..**********************9765 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SuperFamilySSF541711.24E-2193153IPR016177DNA-binding domain
PROSITE profilePS5103221.90494152IPR001471AP2/ERF domain
SMARTSM003801.7E-3494158IPR001471AP2/ERF domain
Gene3DG3DSA:3.30.730.103.2E-2995153IPR001471AP2/ERF domain
PRINTSPR003671.5E-995106IPR001471AP2/ERF domain
PfamPF008471.9E-1295144IPR001471AP2/ERF domain
CDDcd000182.36E-2895153No hitNo description
PRINTSPR003671.5E-9118134IPR001471AP2/ERF domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0003677Molecular FunctionDNA binding
GO:0003700Molecular Functiontranscription factor activity, sequence-specific DNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 243 aa     Download sequence    Send to blast
MSFKPQQQQQ QLYPCFHFST QSYPSDGLPS YYNHHHPATV LHATGYNENN NIYSPEEYFT  60
SHDHHSSSSS GNFVQAHLSN IIDDEASNKG QSSPYVGVRK RPWGKFAAEI RDSTRNGARV  120
WLGTFDTAES AALAYDQAAL ASRGPMAVLN FPEEVVRESL RELKCTVEEN GSPVLALKKK  180
HAHSKKKKAA GRTTGPAMRC AEKIGHGRGD DEELGLYETT DNHALVLEDL GADYLEELLS  240
LC*
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
1gcc_A9e-2695155363ETHYLENE RESPONSIVE ELEMENT BINDING FACTOR 1
Search in ModeBase
Functional Description ? help Back to Top
Source Description
UniProtTranscription activator that binds to the GCC-box cis-acting elements found in the promoter regions of ethylene-responsive genes (PubMed:23057995). Acts downstream of MYC2 in the jasmonate-mediated response to Botrytis cinerea infection (PubMed:28733419). With MYC2 forms a transcription module that regulates pathogen-responsive genes (PubMed:28733419). {ECO:0000269|PubMed:23057995, ECO:0000269|PubMed:28733419}.
Regulation -- Description ? help Back to Top
Source Description
UniProtINDUCTION: Induced by wounding and infection with the fungal pathogen Botrytis cinerea. {ECO:0000269|PubMed:28733419}.
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_019433830.16e-52PREDICTED: ethylene-responsive transcription factor 1B-like
SwissprotA0A3Q7I5Y97e-47ERFC3_SOLLC; Ethylene-response factor C3
TrEMBLA0A394DF261e-50A0A394DF26_LUPAN; Uncharacterized protein
STRINGEMJ074864e-49(Prunus persica)
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT3G23240.13e-29ethylene response factor 1
Publications ? help Back to Top
  1. Tomato Genome Consortium
    The tomato genome sequence provides insights into fleshy fruit evolution.
    Nature, 2012. 485(7400): p. 635-41
    [PMID:22660326]
  2. Pirrello J, et al.
    Functional analysis and binding affinity of tomato ethylene response factors provide insight on the molecular bases of plant differential responses to ethylene.
    BMC Plant Biol., 2012. 12: p. 190
    [PMID:23057995]
  3. Du M, et al.
    MYC2 Orchestrates a Hierarchical Transcriptional Cascade That Regulates Jasmonate-Mediated Plant Immunity in Tomato.
    Plant Cell, 2017. 29(8): p. 1883-1906
    [PMID:28733419]