PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

Kalax.0084s0054.1.p

Organism

Kalanchoe marnieriana

Taxonomic ID

80907

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; Saxifragales; Crassulaceae; Kalanchoe

Family

bHLH

Protein Properties

Length: 527aa MW: 57085.2 Da PI: 5.949

Description

bHLH family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
Kalax.0084s0054.1.p	genome	JGI	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	HLH	39.9	7.4e-13	367	411	6	55
HHHHHHHHHHHHHHHHHHHCTSCCC...TTS-STCHHHHHHHHHHHHHHH CS HLH 6 nerErrRRdriNsafeeLrellPkaskapskKlsKaeiLekAveYIksLq 55 n Er+RR +iN+++ L++l+P + K++Ka++L +A+eY++ Lq Kalax.0084s0054.1.p 367 NLTERKRRGKINEKMRALQDLIPYC-----NKVDKAAMLDEAIEYLRVLQ 411 889*******************8.....6**************998 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
Gene3D	G3DSA:4.10.280.10	2.1E-18	358	424	IPR011598	Myc-type, basic helix-loop-helix (bHLH) domain
SuperFamily	SSF47459	1.11E-18	358	428	IPR011598	Myc-type, basic helix-loop-helix (bHLH) domain
PROSITE profile	PS50888	16.107	361	410	IPR011598	Myc-type, basic helix-loop-helix (bHLH) domain
SMART	SM00353	5.7E-16	367	416	IPR011598	Myc-type, basic helix-loop-helix (bHLH) domain
CDD	cd00083	7.78E-14	367	415	No hit	No description
Pfam	PF00010	2.2E-10	367	411	IPR011598	Myc-type, basic helix-loop-helix (bHLH) domain

Gene Ontology ? help Back to Top
GO Term	GO Category	GO Description
GO:0046983	Molecular Function	protein dimerization activity

Sequence ? help Back to Top
Protein Sequence Length: 527 aa Download sequence Send to blast
MSFPESYCEK MRPNQLKIPR SADKQQITSM PAANSDYGEL VWENGQIVIK GGQSREVSRF 60 PNKGSFINSK TGKSGSRFGF DEVVAGGEAD SDMLSWFYHL DDTLPHESTS GFSAEIFGVT 120 SDVLPVSHSV NKLSNPVKGS ASFALDSKTE LSDSLSLTYS GSEVSSVAGK GVAKYALQSD 180 SLGDQLSELR LYKKQDREAG CPLGGRRSYS HAKNFPHFSR SAARSKNNLI SDGARASGRF 240 VTRETAAATE EMLVDTNDQT IDVMTKDLPG RPVERPASAF RAEGGLKVNQ VSGNAQMERM 300 DADMNKKPAA AAAALPSLCS DNGGVTRLKR KHRDEEDWED SSEDAEEESA IIKEVGSKRS 360 RPTEVDNLTE RKRRGKINEK MRALQDLIPY CNKVDKAAML DEAIEYLRVL QLQVQMMSMR 420 AQMCALPMMA QPGLQHPYTT APSSQFLPLG MGYQAGALDM TTGFPAQAAC FPGQFKPPPI 480 FWNAAQGLPT SMPGLLVPMP GAPPTPAPGS ADETPNSKDP LHEEAV*

Sequence ? help Back to Top

Protein Sequence Length: 527 aa Download sequence Send to blast

MSFPESYCEK MRPNQLKIPR SADKQQITSM PAANSDYGEL VWENGQIVIK GGQSREVSRF  60
PNKGSFINSK TGKSGSRFGF DEVVAGGEAD SDMLSWFYHL DDTLPHESTS GFSAEIFGVT  120
SDVLPVSHSV NKLSNPVKGS ASFALDSKTE LSDSLSLTYS GSEVSSVAGK GVAKYALQSD  180
SLGDQLSELR LYKKQDREAG CPLGGRRSYS HAKNFPHFSR SAARSKNNLI SDGARASGRF  240
VTRETAAATE EMLVDTNDQT IDVMTKDLPG RPVERPASAF RAEGGLKVNQ VSGNAQMERM  300
DADMNKKPAA AAAALPSLCS DNGGVTRLKR KHRDEEDWED SSEDAEEESA IIKEVGSKRS  360
RPTEVDNLTE RKRRGKINEK MRALQDLIPY CNKVDKAAML DEAIEYLRVL QLQVQMMSMR  420
AQMCALPMMA QPGLQHPYTT APSSQFLPLG MGYQAGALDM TTGFPAQAAC FPGQFKPPPI  480
FWNAAQGLPT SMPGLLVPMP GAPPTPAPGS ADETPNSKDP LHEEAV*

Regulation -- PlantRegMap ? help Back to Top
Source	Upstream Regulator	Target Gene
PlantRegMap	Retrieve	-

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT1G09530.2	2e-29	phytochrome interacting factor 3

Link Out ? help Back to Top
Phytozome	Kalax.0084s0054.1.p