PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Home TFext BLAST Prediction Download Help About Links PlantRegMap |
Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | Kalax.0083s0040.4.p | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; Saxifragales; Crassulaceae; Kalanchoe
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Family | ERF | ||||||||
Protein Properties | Length: 200aa MW: 22739 Da PI: 9.8657 | ||||||||
Description | ERF family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | AP2 | 37 | 8.4e-12 | 94 | 135 | 3 | 51 |
AP2 3 ykGVrwdkkrgrWvAeIrdpsengkrkrfslgkfgtaeeAakaaiaark 51 +GV++ k+ +W A I++ +k+++lg+ gt eeAa ++++a+ Kalax.0083s0040.4.p 94 MRGVYF--KNMKWQAAIKVD-----KKQIHLGTVGTQEEAAHLYDRAAY 135 79**98..47*********4.....5********************995 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
SMART | SM00380 | 8.3E-4 | 93 | 152 | IPR001471 | AP2/ERF domain |
Pfam | PF00847 | 6.5E-6 | 93 | 136 | IPR001471 | AP2/ERF domain |
SuperFamily | SSF54171 | 5.82E-8 | 94 | 137 | IPR016177 | DNA-binding domain |
Gene3D | G3DSA:3.30.730.10 | 7.3E-7 | 96 | 140 | IPR001471 | AP2/ERF domain |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0006355 | Biological Process | regulation of transcription, DNA-templated | ||||
GO:0003677 | Molecular Function | DNA binding | ||||
GO:0003700 | Molecular Function | transcription factor activity, sequence-specific DNA binding |
Sequence ? help Back to Top |
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Protein Sequence Length: 200 aa Download sequence Send to blast |
MGLSPCQSCF VDPLADISSN EKKFDSPPLL SKPIIAHSIP PGVDQTKKDD FRPSLNHLSA 60 SSLTKEQPAP PISEFKRRKR HKRKQIQDQE TCLMRGVYFK NMKWQAAIKV DKKQIHLGTV 120 GTQEEAAHLY DRAAYMCGRE PKFELSEVEK QELKQLNWDE FLEITRSTIT SKKHQRRGIV 180 SSMRRSVLSS QHSSSMDGE* |
Nucleic Localization Signal ? help Back to Top | |||
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No. | Start | End | Sequence |
1 | 76 | 84 | RRKRHKRKQ |
2 | 77 | 84 | RKRHKRKQ |
Regulation -- PlantRegMap ? help Back to Top | ||||||
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Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | - |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_019161297.1 | 3e-62 | PREDICTED: ethylene-responsive transcription factor-like protein At4g13040 isoform X1 | ||||
Refseq | XP_019161301.1 | 3e-62 | PREDICTED: ethylene-responsive transcription factor-like protein At4g13040 isoform X1 | ||||
Refseq | XP_019161307.1 | 3e-62 | PREDICTED: ethylene-responsive transcription factor-like protein At4g13040 isoform X1 | ||||
TrEMBL | A0A2I4E5R6 | 1e-54 | A0A2I4E5R6_JUGRE; ethylene-responsive transcription factor-like protein At4g13040 | ||||
STRING | XP_009758059.1 | 9e-54 | (Nicotiana sylvestris) |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT4G13040.1 | 3e-44 | ERF family protein |
Link Out ? help Back to Top | |
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Phytozome | Kalax.0083s0040.4.p |