PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Kalax.0083s0040.2.p
Organism
Kalanchoe marnieriana
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; Saxifragales; Crassulaceae; Kalanchoe
Family ERF
Protein Properties Length: 200aa    MW: 22739 Da    PI: 9.8657
Description ERF family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Kalax.0083s0040.2.pgenomeJGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1AP2378.4e-1294135351
                  AP2   3 ykGVrwdkkrgrWvAeIrdpsengkrkrfslgkfgtaeeAakaaiaark 51 
                           +GV++  k+ +W A I++      +k+++lg+ gt eeAa ++++a+ 
  Kalax.0083s0040.2.p  94 MRGVYF--KNMKWQAAIKVD-----KKQIHLGTVGTQEEAAHLYDRAAY 135
                          79**98..47*********4.....5********************995 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SMARTSM003808.3E-493152IPR001471AP2/ERF domain
PfamPF008476.5E-693136IPR001471AP2/ERF domain
SuperFamilySSF541715.82E-894137IPR016177DNA-binding domain
Gene3DG3DSA:3.30.730.107.3E-796140IPR001471AP2/ERF domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0003677Molecular FunctionDNA binding
GO:0003700Molecular Functiontranscription factor activity, sequence-specific DNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 200 aa     Download sequence    Send to blast
MGLSPCQSCF VDPLADISSN EKKFDSPPLL SKPIIAHSIP PGVDQTKKDD FRPSLNHLSA  60
SSLTKEQPAP PISEFKRRKR HKRKQIQDQE TCLMRGVYFK NMKWQAAIKV DKKQIHLGTV  120
GTQEEAAHLY DRAAYMCGRE PKFELSEVEK QELKQLNWDE FLEITRSTIT SKKHQRRGIV  180
SSMRRSVLSS QHSSSMDGE*
Nucleic Localization Signal ? help Back to Top
NLS
No. Start End Sequence
17684RRKRHKRKQ
27784RKRHKRKQ
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_019161297.13e-62PREDICTED: ethylene-responsive transcription factor-like protein At4g13040 isoform X1
RefseqXP_019161301.13e-62PREDICTED: ethylene-responsive transcription factor-like protein At4g13040 isoform X1
RefseqXP_019161307.13e-62PREDICTED: ethylene-responsive transcription factor-like protein At4g13040 isoform X1
TrEMBLA0A2I4E5R61e-54A0A2I4E5R6_JUGRE; ethylene-responsive transcription factor-like protein At4g13040
STRINGXP_009758059.19e-54(Nicotiana sylvestris)
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT4G13040.13e-44ERF family protein