PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
Home  TFext  BLAST  Prediction  Download  Help  About  Links  PlantRegMap
(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Kalax.0082s0077.1.p
Organism
Kalanchoe marnieriana
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; Saxifragales; Crassulaceae; Kalanchoe
Family MYB
Protein Properties Length: 290aa    MW: 33191 Da    PI: 5.9508
Description MYB family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Kalax.0082s0077.1.pgenomeJGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1Myb_DNA-binding57.43.2e-18855148
                         TSSS-HHHHHHHHHHHHHTTTT-HHHHHHHHTTTS-HHHHHHHHHHHT CS
      Myb_DNA-binding  1 rgrWTteEdellvdavkqlGggtWktIartmgkgRtlkqcksrwqkyl 48
                         +g+W+++Ede+l+ +++++G g+W++ ar+ g++Rt+k+c++rw+++l
  Kalax.0082s0077.1.p  8 KGPWSEQEDEQLLSYIRKYGHGHWEAMARKAGLNRTGKSCRLRWLNHL 55
                         79********************************************97 PP
2Myb_DNA-binding44.43.8e-1462104246
                          SSS-HHHHHHHHHHHHHTTTT-HHHHHHHHTTTS-HHHHHHHHHH CS
      Myb_DNA-binding   2 grWTteEdellvdavkqlGggtWktIartmgkgRtlkqcksrwqk 46 
                          g+ T +E++++++++ ++G++ W++Ia++++ gR+++++k++w++
  Kalax.0082s0077.1.p  62 GNITLQEQLIILQLHSRWGNR-WAKIAECLP-GRSDNEIKNYWRT 104
                          67799****************.*********.***********96 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS5129422.999359IPR017930Myb domain
SuperFamilySSF466891.61E-305102IPR009057Homeodomain-like
Gene3DG3DSA:1.10.10.605.0E-22654IPR009057Homeodomain-like
SMARTSM007173.1E-17757IPR001005SANT/Myb domain
PfamPF002491.8E-16855IPR001005SANT/Myb domain
CDDcd001672.90E-121055No hitNo description
Gene3DG3DSA:1.10.10.601.0E-1955109IPR009057Homeodomain-like
SMARTSM007178.8E-1360108IPR001005SANT/Myb domain
PROSITE profilePS5129415.98560110IPR017930Myb domain
PfamPF002496.3E-1362104IPR001005SANT/Myb domain
CDDcd001672.84E-965104No hitNo description
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0003677Molecular FunctionDNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 290 aa     Download sequence    Send to blast
MATGGVKKGP WSEQEDEQLL SYIRKYGHGH WEAMARKAGL NRTGKSCRLR WLNHLRPGVR  60
HGNITLQEQL IILQLHSRWG NRWAKIAECL PGRSDNEIKN YWRTRVQKQA KQLRCDVNSH  120
QFTEILQHVW MPQLAERVQT QCKSSPTITQ ELECCETSSI SCGKLSNDSA NTHSDAAPLS  180
IPCQLSDPSS SHAYNNDSNR HAADSDTAWR LGAGVDADTY QMNVEKETLS CEDYCPWSEQ  240
GLLEVDKKQE LLETAAWYDH DYCYSLENLL NDDDMILWCQ QLLFDDYRA*
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
1gv2_A6e-2681104105MYB PROTO-ONCOGENE PROTEIN
1h8a_C1e-25811027128MYB TRANSFORMING PROTEIN
1mse_C6e-2681104105C-Myb DNA-Binding Domain
1msf_C6e-2681104105C-Myb DNA-Binding Domain
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_020207547.15e-72transcription factor MYB2
STRINGXP_007163206.12e-68(Phaseolus vulgaris)
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT5G49620.16e-60myb domain protein 78