PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Kalax.0082s0036.1.p
Organism
Kalanchoe marnieriana
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; Saxifragales; Crassulaceae; Kalanchoe
Family MYB
Protein Properties Length: 383aa    MW: 41925.8 Da    PI: 6.5641
Description MYB family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Kalax.0082s0036.1.pgenomeJGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1Myb_DNA-binding58.91.2e-181562148
                         TSSS-HHHHHHHHHHHHHTTTT-HHHHHHHHTTTS-HHHHHHHHHHHT CS
      Myb_DNA-binding  1 rgrWTteEdellvdavkqlGggtWktIartmgkgRtlkqcksrwqkyl 48
                         +g+WT+eEd++lvd++++ G g+W++ ++  g++R++k+c++rw +yl
  Kalax.0082s0036.1.p 15 KGPWTPEEDKKLVDYIEKNGHGSWRALPKLAGLNRCGKSCRLRWTNYL 62
                         79********************************************97 PP
2Myb_DNA-binding54.13.5e-1768113148
                          TSSS-HHHHHHHHHHHHHTTTT-HHHHHHHHTTTS-HHHHHHHHHHHT CS
      Myb_DNA-binding   1 rgrWTteEdellvdavkqlGggtWktIartmgkgRtlkqcksrwqkyl 48 
                          rg++++eE++ +++++  lG++ W++I+++++ gRt++++k++w+++l
  Kalax.0082s0036.1.p  68 RGKFSEEEEQAIINLHSVLGNK-WSAISSHLP-GRTDNEIKNFWNTHL 113
                          89********************.*********.************996 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS5129417.9131062IPR017930Myb domain
SuperFamilySSF466891.42E-3112109IPR009057Homeodomain-like
SMARTSM007175.6E-151464IPR001005SANT/Myb domain
PfamPF002492.8E-171562IPR001005SANT/Myb domain
Gene3DG3DSA:1.10.10.602.9E-241669IPR009057Homeodomain-like
CDDcd001676.49E-121762No hitNo description
PROSITE profilePS5129426.90863117IPR017930Myb domain
SMARTSM007174.5E-1767115IPR001005SANT/Myb domain
PfamPF002495.5E-1668113IPR001005SANT/Myb domain
CDDcd001678.22E-1370113No hitNo description
Gene3DG3DSA:1.10.10.602.3E-2770117IPR009057Homeodomain-like
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0003677Molecular FunctionDNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 383 aa     Download sequence    Send to blast
MMGRSAGSDE NGLKKGPWTP EEDKKLVDYI EKNGHGSWRA LPKLAGLNRC GKSCRLRWTN  60
YLRPDIKRGK FSEEEEQAII NLHSVLGNKW SAISSHLPGR TDNEIKNFWN THLKKKLLQM  120
GIDPITHRPR TDHLNLLANL PQLLAAANLT HLITNSSNPW DNAMRLQQHL SSDHQQHLAK  180
VQLMNNLIQA LNSAANPPSN LDVMMASLFG NQASFQDQRV LESLIRMNGG HVEASEFGNG  240
GQIGHFSASS NPMQLDDFTG LEGTEPFSNP NSAAQISSQF GGGSYCLPPF GDHGSKIPAL  300
VSAASPECGI NGATTLGALD SQFKMSITKN PSTDISNPSS TTSTTFEAWG DHHQMAEDDD  360
ANESYWKDIM DQASSSSWPI RL*
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
1a5j_A4e-29131175108B-MYB
Search in ModeBase
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_023894664.11e-126transcription factor MYB53
TrEMBLA0A061EYD81e-120A0A061EYD8_THECC; Myb domain protein 107
STRINGEOY101101e-121(Theobroma cacao)
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT5G16770.21e-93myb domain protein 9