PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Home TFext BLAST Prediction Download Help About Links PlantRegMap |
Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | Kalax.0081s0026.1.p | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; Saxifragales; Crassulaceae; Kalanchoe
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Family | C2H2 | ||||||||
Protein Properties | Length: 339aa MW: 35780.1 Da PI: 5.4423 | ||||||||
Description | C2H2 family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | zf-C2H2 | 14 | 0.00015 | 213 | 235 | 1 | 23 |
EEETTTTEEESSHHHHHHHHHHT CS zf-C2H2 1 ykCpdCgksFsrksnLkrHirtH 23 ++C++Cg Fs+ L H+r+H Kalax.0081s0026.1.p 213 HECSICGSAFSSGQALGGHMRRH 235 78********************9 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
Pfam | PF13912 | 2.5E-11 | 140 | 166 | IPR007087 | Zinc finger, C2H2 |
SuperFamily | SSF57667 | 1.62E-9 | 140 | 163 | No hit | No description |
PROSITE profile | PS50157 | 10.097 | 141 | 168 | IPR007087 | Zinc finger, C2H2 |
SMART | SM00355 | 0.3 | 141 | 163 | IPR015880 | Zinc finger, C2H2-like |
PROSITE pattern | PS00028 | 0 | 143 | 164 | IPR007087 | Zinc finger, C2H2 |
SuperFamily | SSF57667 | 1.62E-9 | 208 | 235 | No hit | No description |
Gene3D | G3DSA:3.30.160.60 | 5.7E-5 | 211 | 237 | IPR013087 | Zinc finger C2H2-type/integrase DNA-binding domain |
Pfam | PF13912 | 1.5E-11 | 212 | 237 | IPR007087 | Zinc finger, C2H2 |
SMART | SM00355 | 0.022 | 213 | 235 | IPR015880 | Zinc finger, C2H2-like |
PROSITE profile | PS50157 | 10.949 | 213 | 240 | IPR007087 | Zinc finger, C2H2 |
PROSITE pattern | PS00028 | 0 | 215 | 235 | IPR007087 | Zinc finger, C2H2 |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0003676 | Molecular Function | nucleic acid binding | ||||
GO:0046872 | Molecular Function | metal ion binding |
Sequence ? help Back to Top |
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Protein Sequence Length: 339 aa Download sequence Send to blast |
MNFEAVMESA EVESSATEEF AAGASPQIAK RKRTKRRRIA VSSSSSGGGD NKQGCVAASE 60 EEEEEEDRNY ESTVTTATEE EEDMANCLIL LARSGGDGGF GVVNREDSVK TERKRKTTIG 120 SRRTAEASSV AGVGGGGVGV YECRTCDKAF QSFQALGGHR ASHHKKAKVT ATADVTPEEV 180 KVVDQIQMLS SFTPQPVIHL KPSSSSSHSS KVHECSICGS AFSSGQALGG HMRRHRGAVT 240 NDNNQIAPPA AVAESSSHRE EGIVVTERDM SSSNNNNNFL SSLDLNLPAP ADEEDEQRRS 300 SYHEQFAGGQ GNSNSSSTAA PATAALVFSA PPLVGCYF* |
Nucleic Localization Signal ? help Back to Top | |||
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No. | Start | End | Sequence |
1 | 34 | 38 | KRRRI |
Regulation -- PlantRegMap ? help Back to Top | ||||||
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Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | - |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT2G28200.1 | 9e-29 | C2H2 family protein |
Link Out ? help Back to Top | |
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Phytozome | Kalax.0081s0026.1.p |