PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Kalax.0081s0017.1.p
Organism
Kalanchoe marnieriana
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; Saxifragales; Crassulaceae; Kalanchoe
Family MYB
Protein Properties Length: 393aa    MW: 43945.7 Da    PI: 6.7742
Description MYB family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Kalax.0081s0017.1.pgenomeJGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1Myb_DNA-binding49.69.2e-161462148
                         TSSS-HHHHHHHHHHHHHTTTT.-HHHHHHHHTTTS-HHHHHHHHHHHT CS
      Myb_DNA-binding  1 rgrWTteEdellvdavkqlGgg.tWktIartmgkgRtlkqcksrwqkyl 48
                         +g+W++eEd +l+d++ + G+g +W t +++ g++R++k+c++rw++yl
  Kalax.0081s0017.1.p 14 KGPWSPEEDSKLKDYIDKNGTGgNWITLPHKAGLRRCGKSCRLRWLNYL 62
                         79*********************************************97 PP
2Myb_DNA-binding33.78.5e-1169111246
                          SSS-HHHHHHHHHHHHHTTTT-HHHHHHHHTTTS-HHHHHHHHHH CS
      Myb_DNA-binding   2 grWTteEdellvdavkqlGggtWktIartmgkgRtlkqcksrwqk 46 
                          g ++ eEd  +  + +  G++ W+ Ia+ ++ gRt++++k++w++
  Kalax.0081s0017.1.p  69 GEFSGEEDRVICSLYATIGSR-WSIIAAQLP-GRTDNDIKNYWNT 111
                          67999****************.*********.***********97 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS5129414.27962IPR017930Myb domain
SuperFamilySSF466895.43E-2611109IPR009057Homeodomain-like
SMARTSM007171.4E-101364IPR001005SANT/Myb domain
PfamPF002496.8E-141462IPR001005SANT/Myb domain
Gene3DG3DSA:1.10.10.607.2E-221569IPR009057Homeodomain-like
CDDcd001671.07E-71662No hitNo description
PROSITE profilePS5129420.64463117IPR017930Myb domain
SMARTSM007176.5E-1167115IPR001005SANT/Myb domain
PfamPF002491.4E-969111IPR001005SANT/Myb domain
CDDcd001671.59E-770113No hitNo description
Gene3DG3DSA:1.10.10.605.4E-2370117IPR009057Homeodomain-like
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0003677Molecular FunctionDNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 393 aa     Download sequence    Send to blast
MGRAPCCDKA NVKKGPWSPE EDSKLKDYID KNGTGGNWIT LPHKAGLRRC GKSCRLRWLN  60
YLRPNIKHGE FSGEEDRVIC SLYATIGSRW SIIAAQLPGR TDNDIKNYWN TKLKKKLMAF  120
AAAAATSSIT PDKPAPSPSI YPTSSQMTSL YSYNSYYSAN PSKKPLMDDN QQTFSCHQMT  180
NPTSAATTTA GTSCCLETGL SLFQTQMQHQ NQQFYQPLML GSDHQQTSCS SNTSDNGGTS  240
CGNKHDSYQN NVVVPSGFEF DDELHLDNQN NKQRQGLMLH GYDEINNDNL FLSHQFDHQN  300
SIINSSTDND APAALMDFYV DDTAVGGGDK QQQQLNMNMN NGRSFINNNG GDNNHQVIIN  360
SKITSLQDHQ QAMMMKEKDE RMMMYYFNTN YC*
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
1a5j_A4e-26141177108B-MYB
Search in ModeBase
Functional Description ? help Back to Top
Source Description
UniProtTranscription factors that activates genes required for endodermal differentiation but represses genes involved in proliferative divisions, thus regulating the transition from proliferation to differentiation in root endodermis (PubMed:26371322). Required for Casparian strip formation by positively regulating the expression of the Casparian strip genes CASP1, PER64 and ESB1 and other endodermis-specific genes, thus triggering correct localized lignin biosynthesis in root endodermis and subsequently regulating global ion homeostasis (PubMed:26124109, PubMed:26371322). {ECO:0000269|PubMed:26124109, ECO:0000269|PubMed:26371322}.
Regulation -- Description ? help Back to Top
Source Description
UniProtINDUCTION: Directly up-regulated by SCARECROW (SCR), as part of the differentiation program controlled by SHORT-ROOT (SHR). {ECO:0000269|PubMed:24517883, ECO:0000269|PubMed:26371322}.
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_009612981.15e-84PREDICTED: transcription factor RAX2-like
SwissprotQ9FKL23e-75MYB36_ARATH; Transcription factor MYB36
TrEMBLH6WE872e-82H6WE87_TOBAC; Ntrax
STRINGXP_009612981.12e-83(Nicotiana tomentosiformis)
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT5G57620.13e-71myb domain protein 36
Publications ? help Back to Top
  1. Fernández-Marcos M, et al.
    Control of Arabidopsis lateral root primordium boundaries by MYB36.
    New Phytol., 2017. 213(1): p. 105-112
    [PMID:27891649]