PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | Kalax.0080s0010.1.p | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; Saxifragales; Crassulaceae; Kalanchoe
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Family | C2H2 | ||||||||
Protein Properties | Length: 571aa MW: 63410.8 Da PI: 6.7802 | ||||||||
Description | C2H2 family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | zf-C2H2 | 13.9 | 0.00016 | 459 | 479 | 3 | 23 |
ETTTTEEESSHHHHHHHHHH.T CS zf-C2H2 3 CpdCgksFsrksnLkrHirt.H 23 C +Cgk F ++ ++++H+++ H Kalax.0080s0010.1.p 459 CDKCGKAF-QQAEMEKHMKVfH 479 ********.**********988 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
Pfam | PF03152 | 1.9E-42 | 90 | 260 | IPR004854 | Ubiquitin fusion degradation protein UFD1 |
SuperFamily | SSF49599 | 9.15E-6 | 411 | 460 | IPR008974 | TRAF-like |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0006511 | Biological Process | ubiquitin-dependent protein catabolic process | ||||
GO:0005515 | Molecular Function | protein binding |
Sequence ? help Back to Top |
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Protein Sequence Length: 571 aa Download sequence Send to blast |
MDFELRRARE KLEKEQKERK EKARLKLERE RKAKLEAFRQ QEAIEAARRT RRIDAAEAQL 60 KADEQMQESL IAGKGIVFHR FLTPVLYEGS GDKIKLPLSC FKELSDQGAF DKGPLYFRLS 120 VVQQNSPSDP NPNGEDTQRS THSGVLEFTA DEDCVALPRH VWNNLFPTAA IAAPLVEVRY 180 VWLPKGVYAK LQPDRIGFSD IPNHKAVLET ILRHHATLSE NDLLTVNHGI LTYTLRVLEL 240 RPSSSVSVLE TDIEVDVVSP DKTSITADQP YLQPLELGKS ESGALDEGNY VYYKFSINGD 300 VWSIIESGDA NVCVKMETGE NDGDTDLYVS RHPLLFPTTH QHQWSSHDVG SKTLTMTAKD 360 ENLGAGSYTV GVYGFKGTSK YKLTVTIEAA ASQKVGPKAT STSQAAEVDT VECRNCKHSI 420 PSRSITLHEA YCSRNNVTCK RPGCGVVLRV GEAKNHVHCD KCGKAFQQAE MEKHMKVFHE 480 PLQCPCGVLL EKEDMVQHQA ADCPLRLITC RFCGDMVQAG NSAIDVRDRM RGLSEHESGC 540 GSRTAPCSTC GRSVMLKDMD IHQVAVHPNN * |
3D Structure ? help Back to Top | ||||||
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PDB ID | Evalue | Query Start | Query End | Hit Start | Hit End | Description |
2yuj_A | 7e-22 | 91 | 256 | 40 | 187 | Ubiquitin fusion degradation 1-like |
Search in ModeBase |
Regulation -- PlantRegMap ? help Back to Top | ||||||
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Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | - |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_002273297.1 | 0.0 | PREDICTED: uncharacterized protein LOC100246609 | ||||
TrEMBL | F6HID7 | 0.0 | F6HID7_VITVI; Uncharacterized protein | ||||
STRING | VIT_12s0059g01100.t01 | 0.0 | (Vitis vinifera) |
Link Out ? help Back to Top | |
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Phytozome | Kalax.0080s0010.1.p |