PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Kalax.0079s0040.1.p
Organism
Kalanchoe marnieriana
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; Saxifragales; Crassulaceae; Kalanchoe
Family ERF
Protein Properties Length: 204aa    MW: 22224.6 Da    PI: 5.1062
Description ERF family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Kalax.0079s0040.1.pgenomeJGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1AP254.52.9e-172979155
                  AP2  1 sgykGVrwdkkrgrWvAeIrdpsengkrkrfslgkfgtaeeAakaaiaarkkleg 55
                         ++y GVr +  +g+Wv+eIr+p++   + r++lg+f tae+Aa a++ a+++++g
  Kalax.0079s0040.1.p 29 PKYLGVRKRA-WGKWVSEIREPRK---KSRIWLGTFQTAEMAAIAHDVAALAIKG 79
                         79*****887.**********843...6**********************99887 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
CDDcd000188.41E-312989No hitNo description
PfamPF008479.5E-112979IPR001471AP2/ERF domain
SMARTSM003803.1E-333093IPR001471AP2/ERF domain
Gene3DG3DSA:3.30.730.102.2E-303088IPR001471AP2/ERF domain
PROSITE profilePS5103221.6283087IPR001471AP2/ERF domain
SuperFamilySSF541712.09E-203088IPR016177DNA-binding domain
PRINTSPR003671.7E-93142IPR001471AP2/ERF domain
PRINTSPR003671.7E-95369IPR001471AP2/ERF domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0003677Molecular FunctionDNA binding
GO:0003700Molecular Functiontranscription factor activity, sequence-specific DNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 204 aa     Download sequence    Send to blast
DAQLPQIMEQ VGKTREEEGK NSNSSMHHPK YLGVRKRAWG KWVSEIREPR KKSRIWLGTF  60
QTAEMAAIAH DVAALAIKGG KVRLNFPDLA RELPRPATAD PKDIQAAAAQ AATYKLSASG  120
EQESPAAASS DNSPATTASP TCTHSESRNS DSVAHSSFDD AFFDTLPDLF DNLSSEADIY  180
ESLESSCFLQ KDFCWASGEW FIA*
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
2gcc_A2e-153187663ATERF1
3gcc_A2e-153187663ATERF1
5wx9_A2e-1528871272Ethylene-responsive transcription factor ERF096
Search in ModeBase
Functional Description ? help Back to Top
Source Description
UniProtProbably acts as a transcriptional activator. Binds to the GCC-box pathogenesis-related promoter element. May be involved in the regulation of gene expression by stress factors and by components of stress signal transduction pathways (By similarity). {ECO:0000250}.
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_010677077.15e-46PREDICTED: ethylene-responsive transcription factor ERF039
SwissprotQ9ZQP31e-42ERF38_ARATH; Ethylene-responsive transcription factor ERF038
TrEMBLA0A2Z7CQJ39e-45A0A2Z7CQJ3_9LAMI; Uncharacterized protein
STRINGXP_010677077.12e-45(Beta vulgaris)
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT2G35700.16e-33ERF family protein
Publications ? help Back to Top
  1. Duarte JM, et al.
    Expression pattern shifts following duplication indicative of subfunctionalization and neofunctionalization in regulatory genes of Arabidopsis.
    Mol. Biol. Evol., 2006. 23(2): p. 469-78
    [PMID:16280546]