PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Kalax.0079s0019.1.p
Organism
Kalanchoe marnieriana
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; Saxifragales; Crassulaceae; Kalanchoe
Family GRAS
Protein Properties Length: 360aa    MW: 39043.4 Da    PI: 6.2689
Description GRAS family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Kalax.0079s0019.1.pgenomeJGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1GRAS3728.1e-114235115374
                 GRAS  15 gdlelaqalLarlselaspdgdpmqRlaayfteALaarlarsvselykalppsetseknsseelaalklfsevsPilkfshltaNqaIle 104
                          ++l++a+ lL ++sel+sp g++ +R+aayf+ AL+ar+ +s+ ++y+ l+ ++ + ++     +a++ ++ +sP++kfsh+taNqaI +
  Kalax.0079s0019.1.p   2 DNLSEASDLLPEISELSSPFGSSPERVAAYFAHALQARIISSCLGTYSPLNIKTLTASHNHIISNAFQSYNSISPLIKFSHFTANQAIFQ 91 
                          6899****************************************************9999999999************************ PP

                 GRAS 105 avegeervHiiDfdisqGlQWpaLlqaLasRpegppslRiTgvgspesgskeeleetgerLakfAeelgvpfefnvlvakrledleleeL 194
                          a+ege+rvH+iD+di+qGlQWp L++ LasRp++  s+RiTgvgs    s++ le+tg+rLa+fA++lg+pfef+++  k  + ++l++L
  Kalax.0079s0019.1.p  92 ALEGEDRVHVIDLDIMQGLQWPGLFHILASRPRKIKSVRITGVGS----SSDLLEATGRRLADFASSLGLPFEFHPFEGKVGNIVDLSQL 177
                          *********************************************....9**************************99999999****** PP

                 GRAS 195 rvkpgEalaVnlvlqlhrlldesvsleserdevLklvkslsPkvvvvveqeadh.nsesFlerflealeyysalfdsleaklpreseeri 283
                           v+ gEa++V++++  h l+d ++s       +L+l+  l+Pk++++veq+++h +++sFl rf+eal+yysalfd+l  +++ +s er+
  Kalax.0079s0019.1.p 178 GVNCGEAVVVHWMH--HCLYDITGSDFG----TLRLLSLLKPKLITIVEQDLSHgGGGSFLGRFVEALHYYSALFDALGDGAGGDSIERH 261
                          ************99..777766777777....**********************9999********************9999******** PP

                 GRAS 284 kvErellgreivnvvacegaerrerhetlekWrerleeaGFkpvplsekaakqaklllrkvksdgyrveeesgslvlgWkdrpLvsvSaW 373
                          +vE++l+g+ei+n+va  g +r+ + + +e+W + l++aGF+pv+l+ + a+qa+lll +++++gy++ eesg+l lgWkd +L+++SaW
  Kalax.0079s0019.1.p 262 TVEQQLFGWEIRNIVAVGGPKRTGEVK-VERWGDELGRAGFRPVSLGGSPAAQASLLLGMFPWKGYTLVEESGCLKLGWKDLSLLTASAW 350
                          *********************998887.9************************************************************* PP

                 GRAS 374 r 374
                          +
  Kalax.0079s0019.1.p 351 E 351
                          5 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS5098555.8581331IPR005202Transcription factor GRAS
PfamPF035142.8E-1112351IPR005202Transcription factor GRAS
Sequence ? help Back to Top
Protein Sequence    Length: 360 aa     Download sequence    Send to blast
MDNLSEASDL LPEISELSSP FGSSPERVAA YFAHALQARI ISSCLGTYSP LNIKTLTASH  60
NHIISNAFQS YNSISPLIKF SHFTANQAIF QALEGEDRVH VIDLDIMQGL QWPGLFHILA  120
SRPRKIKSVR ITGVGSSSDL LEATGRRLAD FASSLGLPFE FHPFEGKVGN IVDLSQLGVN  180
CGEAVVVHWM HHCLYDITGS DFGTLRLLSL LKPKLITIVE QDLSHGGGGS FLGRFVEALH  240
YYSALFDALG DGAGGDSIER HTVEQQLFGW EIRNIVAVGG PKRTGEVKVE RWGDELGRAG  300
FRPVSLGGSP AAQASLLLGM FPWKGYTLVE ESGCLKLGWK DLSLLTASAW EPCDHRPST*
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
5b3g_A1e-158235233380Protein SCARECROW
Search in ModeBase
Functional Description ? help Back to Top
Source Description
UniProtProbable transcription factor involved in plant development. {ECO:0000250}.
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_017969872.10.0PREDICTED: scarecrow-like protein 23
SwissprotQ9FHZ11e-178SCL23_ARATH; Scarecrow-like protein 23
TrEMBLA0A061DTB20.0A0A061DTB2_THECC; SCL domain class transcription factor
STRINGEOX931730.0(Theobroma cacao)
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT5G41920.11e-164GRAS family protein
Publications ? help Back to Top
  1. Ding Y, et al.
    Four distinct types of dehydration stress memory genes in Arabidopsis thaliana.
    BMC Plant Biol., 2013. 13: p. 229
    [PMID:24377444]
  2. Yoon EK, et al.
    Conservation and Diversification of the SHR-SCR-SCL23 Regulatory Network in the Development of the Functional Endodermis in Arabidopsis Shoots.
    Mol Plant, 2016. 9(8): p. 1197-1209
    [PMID:27353361]