PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

Kalax.0079s0012.1.p

Organism

Kalanchoe marnieriana

Taxonomic ID

80907

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; Saxifragales; Crassulaceae; Kalanchoe

Family

TALE

Protein Properties

Length: 644aa MW: 70556 Da PI: 8.3255

Description

TALE family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
Kalax.0079s0012.1.p	genome	JGI	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	Homeobox	29.1	1.7e-09	364	401	19	54
HHH..SSS--HHHHHHHHHHCTS-HHHHHHHHHHHHHH CS Homeobox 19 Fek..nrypsaeereeLAkklgLterqVkvWFqNrRak 54 Fe ++yp+ ++++ LAk+ gLt +qV++WF N R + Kalax.0079s0012.1.p 364 FEHflHPYPKDSDKQMLAKQAGLTRSQVSNWFINARVR 401 554459******************************88 PP
2	BELL	110.5	9.4e-36	228	298	1	71
BELL 1 erqelqkkkakLlslleeVdkrYkqyveqlqtvissFeavaglgsakpYtslAlkaiSrhFrcLkdaiaeq 71 er+e+q+kk kLl +l+eV+ rY+qy++q+q+vi+sFe++ag gsa+ Yt+lAl++iSr+FrcLkdai+ q Kalax.0079s0012.1.p 228 ERHEIQMKKGKLLCMLDEVELRYRQYQQQMQIVIASFEQAAGQGSARTYTALALRTISRQFRCLKDAIVVQ 298 79******************************************************************998 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
SMART	SM00574	3.1E-56	150	297	IPR006563	POX domain
Pfam	PF07526	3.0E-45	155	296	IPR006563	POX domain
PROSITE profile	PS50071	12.228	342	405	IPR001356	Homeobox domain
Gene3D	G3DSA:1.10.10.60	7.8E-28	344	419	IPR009057	Homeodomain-like
CDD	cd00086	1.27E-11	345	406	No hit	No description
SMART	SM00389	1.2E-8	345	409	IPR001356	Homeobox domain
SuperFamily	SSF46689	2.65E-16	346	412	IPR009057	Homeodomain-like
Pfam	PF05920	8.5E-18	362	401	IPR008422	Homeobox KN domain

Gene Ontology ? help Back to Top
GO Term	GO Category	GO Description
GO:0006355	Biological Process	regulation of transcription, DNA-templated
GO:0003677	Molecular Function	DNA binding

Sequence ? help Back to Top
Protein Sequence Length: 644 aa Download sequence Send to blast
MAAYFNGGNS QIQAADGLQT LIFMNPSYVN NHHHQNPNNF VFANPSMSPA TDQSQQLVGV 60 PLQQNQHPEP ISALHGLVPR PHYNLWTPIV RDNPRPQKGL SLSLSNSQQQ QQQVGFAGTP 120 SSAISPSSGS KDDGIGTPSP ASVISNGPAS GLRSVLLCSK YLKATQQLLE EVVNVGSAMD 180 SAKKKGTATG SSSKAAAEAS SPEAAAAAVA VGDGENGGKK AAELSTAERH EIQMKKGKLL 240 CMLDEVELRY RQYQQQMQIV IASFEQAAGQ GSARTYTALA LRTISRQFRC LKDAIVVQMR 300 AMSKSLGEEE DMGIKEGGSR LKFVDHHLRQ QRALQQLGMI QHNAWRPQRG LPERSVSVLR 360 AWLFEHFLHP YPKDSDKQML AKQAGLTRSQ VSNWFINARV RLWKPMVEEM YNEEVKEQEN 420 HESTDKTGIS GNNNAKAYAS KVPTHDNISF KNVSPEDTGA TAAAKSDSVS PGRLRNQNTG 480 FSLVGSSELE GISEMSPKRQ RTNHLMINPT DSFQSNMEMK SIHASNEHVL MQFGIERQTR 540 DDYSLMAAGP FGSCPMEEIN QFDSSHQYQP RFSGNGGVSL TLGLTDTLFP NQNMRRMDTG 600 EATEFGTINN NPNPARTTST AYESINIQNP KRFPVQLLPD FVA*

Sequence ? help Back to Top

Protein Sequence Length: 644 aa Download sequence Send to blast

MAAYFNGGNS QIQAADGLQT LIFMNPSYVN NHHHQNPNNF VFANPSMSPA TDQSQQLVGV  60
PLQQNQHPEP ISALHGLVPR PHYNLWTPIV RDNPRPQKGL SLSLSNSQQQ QQQVGFAGTP  120
SSAISPSSGS KDDGIGTPSP ASVISNGPAS GLRSVLLCSK YLKATQQLLE EVVNVGSAMD  180
SAKKKGTATG SSSKAAAEAS SPEAAAAAVA VGDGENGGKK AAELSTAERH EIQMKKGKLL  240
CMLDEVELRY RQYQQQMQIV IASFEQAAGQ GSARTYTALA LRTISRQFRC LKDAIVVQMR  300
AMSKSLGEEE DMGIKEGGSR LKFVDHHLRQ QRALQQLGMI QHNAWRPQRG LPERSVSVLR  360
AWLFEHFLHP YPKDSDKQML AKQAGLTRSQ VSNWFINARV RLWKPMVEEM YNEEVKEQEN  420
HESTDKTGIS GNNNAKAYAS KVPTHDNISF KNVSPEDTGA TAAAKSDSVS PGRLRNQNTG  480
FSLVGSSELE GISEMSPKRQ RTNHLMINPT DSFQSNMEMK SIHASNEHVL MQFGIERQTR  540
DDYSLMAAGP FGSCPMEEIN QFDSSHQYQP RFSGNGGVSL TLGLTDTLFP NQNMRRMDTG  600
EATEFGTINN NPNPARTTST AYESINIQNP KRFPVQLLPD FVA*

3D Structure ? help Back to Top

PDB ID	Evalue	Query Start	Query End	Hit Start	Hit End	Description
3k2a_A	1e-15	351	409	5	63	Homeobox protein Meis2
3k2a_B	1e-15	351	409	5	63	Homeobox protein Meis2
Search in ModeBase

Regulation -- PlantRegMap ? help Back to Top
Source	Upstream Regulator	Target Gene
PlantRegMap	Retrieve	-

Annotation -- Nucleotide ? help Back to Top
Source	Hit ID	E-value	Description
GenBank	EU622857	0.0	EU622857.1 Kalanchoe x houghtonii BEL1 (Bel1) mRNA, complete cds.

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_018809867.1	0.0	PREDICTED: BEL1-like homeodomain protein 1
Refseq	XP_018809868.1	0.0	PREDICTED: BEL1-like homeodomain protein 1
Refseq	XP_018809869.1	0.0	PREDICTED: BEL1-like homeodomain protein 1
Refseq	XP_018809870.1	0.0	PREDICTED: BEL1-like homeodomain protein 1
Refseq	XP_018809871.1	0.0	PREDICTED: BEL1-like homeodomain protein 1
Swissprot	Q9SJ56	1e-144	BLH1_ARATH; BEL1-like homeodomain protein 1
TrEMBL	B2MV69	0.0	B2MV69_9MAGN; BEL1
STRING	EOY08486	0.0	(Theobroma cacao)
STRING	POPTR_0006s21950.1	0.0	(Populus trichocarpa)

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT2G35940.3	1e-126	BEL1-like homeodomain 1

Link Out ? help Back to Top
Phytozome	Kalax.0079s0012.1.p

Publications ? help Back to Top
Duarte JM, et al. Expression pattern shifts following duplication indicative of subfunctionalization and neofunctionalization in regulatory genes of Arabidopsis. Mol. Biol. Evol., 2006. 23(2): p. 469-78 [PMID:16280546] Ding Y, et al. Four distinct types of dehydration stress memory genes in Arabidopsis thaliana. BMC Plant Biol., 2013. 13: p. 229 [PMID:24377444]