PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Kalax.0078s0080.1.p
Organism
Kalanchoe marnieriana
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; Saxifragales; Crassulaceae; Kalanchoe
Family MYB
Protein Properties Length: 284aa    MW: 30676.6 Da    PI: 7.4728
Description MYB family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Kalax.0078s0080.1.pgenomeJGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1Myb_DNA-binding47.25.2e-151462148
                         TSSS-HHHHHHHHHHHHHTTTT.-HHHHHHHHTTTS-HHHHHHHHHHHT CS
      Myb_DNA-binding  1 rgrWTteEdellvdavkqlGgg.tWktIartmgkgRtlkqcksrwqkyl 48
                         rg+W +eEde+l  +++++G+g +W + +++ g++R++k+c++rw++yl
  Kalax.0078s0080.1.p 14 RGPWCPEEDEILRSYIELHGTGgNWIALPSKAGLKRCGKSCRLRWLNYL 62
                         89*********************************************97 PP
2Myb_DNA-binding42.91.1e-1369111246
                          SSS-HHHHHHHHHHHHHTTTT-HHHHHHHHTTTS-HHHHHHHHHH CS
      Myb_DNA-binding   2 grWTteEdellvdavkqlGggtWktIartmgkgRtlkqcksrwqk 46 
                          g++T+eEd  +  +  ++G++ W+ Ia+++  gRt++++k++w++
  Kalax.0078s0080.1.p  69 GAFTEEEDRVIFSLYSEMGSR-WSVIAARLH-GRTDNDVKNHWNT 111
                          89*******************.*********.***********97 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS5129412.664962IPR017930Myb domain
SuperFamilySSF466894.79E-2712109IPR009057Homeodomain-like
SMARTSM007173.4E-101364IPR001005SANT/Myb domain
PfamPF002497.8E-141462IPR001005SANT/Myb domain
Gene3DG3DSA:1.10.10.601.9E-231569IPR009057Homeodomain-like
CDDcd001675.31E-81662No hitNo description
PROSITE profilePS5129422.62363117IPR017930Myb domain
SMARTSM007174.3E-1367115IPR001005SANT/Myb domain
PfamPF002492.0E-1269111IPR001005SANT/Myb domain
CDDcd001673.72E-1070113No hitNo description
Gene3DG3DSA:1.10.10.601.7E-2370116IPR009057Homeodomain-like
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0003677Molecular FunctionDNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 284 aa     Download sequence    Send to blast
MGRAPCCDKA KVKRGPWCPE EDEILRSYIE LHGTGGNWIA LPSKAGLKRC GKSCRLRWLN  60
YLRPDIKHGA FTEEEDRVIF SLYSEMGSRW SVIAARLHGR TDNDVKNHWN TKLKKLMVMK  120
DQREAYAAAH SSSVSSHRES YSFVKFPNMK AKTHQESASA VPNLQPGVFG YGGSGLAFAH  180
CDPVGFNAPT GQTAMPACYA SKAVSDLSGG SSSVNNGEGF LIDMLNYGEG VGDGCHELLQ  240
SAVLGSGDQK CSGTEDLAGN GAVPTFSAML SEYMYQGGLV DQY*
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
1a5j_A3e-25141157106B-MYB
Search in ModeBase
Functional Description ? help Back to Top
Source Description
UniProtTranscription factors that activates genes required for endodermal differentiation but represses genes involved in proliferative divisions, thus regulating the transition from proliferation to differentiation in root endodermis (PubMed:26371322). Required for Casparian strip formation by positively regulating the expression of the Casparian strip genes CASP1, PER64 and ESB1 and other endodermis-specific genes, thus triggering correct localized lignin biosynthesis in root endodermis and subsequently regulating global ion homeostasis (PubMed:26124109, PubMed:26371322). {ECO:0000269|PubMed:26124109, ECO:0000269|PubMed:26371322}.
Regulation -- Description ? help Back to Top
Source Description
UniProtINDUCTION: Directly up-regulated by SCARECROW (SCR), as part of the differentiation program controlled by SHORT-ROOT (SHR). {ECO:0000269|PubMed:24517883, ECO:0000269|PubMed:26371322}.
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_020700672.17e-72transcription factor MYB36
SwissprotQ9FKL22e-65MYB36_ARATH; Transcription factor MYB36
TrEMBLA0A1S6GLM31e-70A0A1S6GLM3_9POAL; MYB transcription factor MYB17 (Fragment)
TrEMBLA0A2I0WSE92e-70A0A2I0WSE9_9ASPA; Transcription factor RAX2
STRINGXP_009799606.12e-70(Nicotiana sylvestris)
STRINGXP_009620040.12e-70(Nicotiana tomentosiformis)
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT2G36890.19e-68MYB family protein
Publications ? help Back to Top
  1. Fernández-Marcos M, et al.
    Control of Arabidopsis lateral root primordium boundaries by MYB36.
    New Phytol., 2017. 213(1): p. 105-112
    [PMID:27891649]