PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Kalax.0077s0018.1.p
Organism
Kalanchoe marnieriana
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; Saxifragales; Crassulaceae; Kalanchoe
Family TALE
Protein Properties Length: 343aa    MW: 38106.6 Da    PI: 4.7679
Description TALE family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Kalax.0077s0018.1.pgenomeJGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1Homeobox24.45e-082883202355
                          SS--HHHHHHHHHHCTS-HHHHHHHHHHHHHHH CS
             Homeobox  23 rypsaeereeLAkklgLterqVkvWFqNrRake 55 
                          +yp++ ++  LA+ +gL+++q+ +WF N+R ++
  Kalax.0077s0018.1.p 288 PYPTEVDKIALAECTGLDQKQINNWFINQRKRH 320
                          8*****************************885 PP
2ELK37.26.2e-13240261122
                  ELK   1 ELKhqLlrKYsgyLgsLkqEFs 22 
                          ELK+ LlrKYsgy+++Lk+EFs
  Kalax.0077s0018.1.p 240 ELKDKLLRKYSGYISTLKHEFS 261
                          9********************8 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SMARTSM012554.0E-2399143IPR005540KNOX1
PfamPF037901.3E-20101142IPR005540KNOX1
SMARTSM012561.2E-21149200IPR005541KNOX2
PfamPF037911.3E-22153199IPR005541KNOX2
PROSITE profilePS5121310.772240260IPR005539ELK domain
SMARTSM011888.9E-8240261IPR005539ELK domain
PfamPF037898.7E-11240261IPR005539ELK domain
PROSITE profilePS5007111.742260323IPR001356Homeobox domain
SuperFamilySSF466893.17E-19261333IPR009057Homeodomain-like
SMARTSM003897.1E-12262327IPR001356Homeobox domain
Gene3DG3DSA:1.10.10.603.4E-27265324IPR009057Homeodomain-like
CDDcd000861.51E-11272324No hitNo description
PfamPF059204.7E-17280319IPR008422Homeobox KN domain
PROSITE patternPS000270298321IPR017970Homeobox, conserved site
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0005634Cellular Componentnucleus
GO:0043565Molecular Functionsequence-specific DNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 343 aa     Download sequence    Send to blast
MDEMYGCLHY ATPDLASSTP PPLLLPSLSH HHNPLLLSPL PPPPNSSLIS PDDDFAFRDH  60
YHQPMFGSDH PSSFFSMSSA MSDAASAVAA EIQDGDFSSA LRARIAAHPL YPRLVEAYID  120
CQKVGAPPDV AYVLDEIRRE NDLSGAASVT ACFGADPELD EFMESYCDIL AKYRSDLAKP  180
FHEATSYLNS MEAQLSSLCN YNGASLGHVS DDAAGSSEEE LSGGESADIM GFLPNSEDQE  240
LKDKLLRKYS GYISTLKHEF SKKKKKGKLP KDAKQVLLGW WNDHYKWPYP TEVDKIALAE  300
CTGLDQKQIN NWFINQRKRH WKPSENMQFA VMDTDSLLYT NE*
Functional Description ? help Back to Top
Source Description
UniProtPlays a role in meristem function. Contributes to the shoot apical meristem (SAM) maintenance and organ separation by controlling boundary establishment in embryo in a CUC1, CUC2 and STM-dependent manner. Involved in maintaining cells in an undifferentiated, meristematic state. Probably binds to the DNA sequence 5'-TGAC-3'. {ECO:0000269|PubMed:16798887}.
Regulation -- Description ? help Back to Top
Source Description
UniProtINDUCTION: Seems to be repressed by AS2 and AS1 but induced by STM, CUC1 and CUC2. {ECO:0000269|PubMed:11311158, ECO:0000269|PubMed:16798887}.
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_002282076.11e-130PREDICTED: homeobox protein knotted-1-like 6
SwissprotQ84JS61e-107KNAT6_ARATH; Homeobox protein knotted-1-like 6
TrEMBLD7SHP31e-129D7SHP3_VITVI; Uncharacterized protein
STRINGVIT_17s0000g08710.t011e-129(Vitis vinifera)
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT1G23380.13e-87KNOTTED1-like homeobox gene 6
Publications ? help Back to Top
  1. Duarte JM, et al.
    Expression pattern shifts following duplication indicative of subfunctionalization and neofunctionalization in regulatory genes of Arabidopsis.
    Mol. Biol. Evol., 2006. 23(2): p. 469-78
    [PMID:16280546]
  2. Khan M, et al.
    Repression of Lateral Organ Boundary Genes by PENNYWISE and POUND-FOOLISH Is Essential for Meristem Maintenance and Flowering in Arabidopsis.
    Plant Physiol., 2015. 169(3): p. 2166-86
    [PMID:26417006]