PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Kalax.0075s0052.1.p
Organism
Kalanchoe marnieriana
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; Saxifragales; Crassulaceae; Kalanchoe
Family ERF
Protein Properties Length: 141aa    MW: 15158.7 Da    PI: 8.4343
Description ERF family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Kalax.0075s0052.1.pgenomeJGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1AP265.21.3e-201263256
                  AP2  2 gykGVrwdkkrgrWvAeIrdpsengkrkrfslgkfgtaeeAakaaiaarkklege 56
                         +y+G+r+++ +g+++AeIrd   n++ +r++lg+f+taeeAa+a+++a+ +++g+
  Kalax.0075s0052.1.p 12 RYRGIRRRP-WGKFAAEIRDS--NNQGARIWLGTFDTAEEAARAYDRAAYNMRGA 63
                         69*******.**********4..2345*************************995 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
CDDcd000182.94E-191271No hitNo description
SuperFamilySSF541713.99E-231271IPR016177DNA-binding domain
SMARTSM003805.4E-341276IPR001471AP2/ERF domain
PfamPF008472.4E-151262IPR001471AP2/ERF domain
Gene3DG3DSA:3.30.730.102.2E-311272IPR001471AP2/ERF domain
PROSITE profilePS5103223.6831270IPR001471AP2/ERF domain
PRINTSPR003676.7E-121324IPR001471AP2/ERF domain
PRINTSPR003676.7E-123652IPR001471AP2/ERF domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0003677Molecular FunctionDNA binding
GO:0003700Molecular Functiontranscription factor activity, sequence-specific DNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 141 aa     Download sequence    Send to blast
MGDKDSGGDG VRYRGIRRRP WGKFAAEIRD SNNQGARIWL GTFDTAEEAA RAYDRAAYNM  60
RGALAVLNFP EEYELTASRG SAGSNVQGSA GSSSTSRSGK EVIEFECLDN QVLEDMLDWG  120
NAAEGDGGSA KADKKKKKKK *
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
5wx9_A3e-3651122114Ethylene-responsive transcription factor ERF096
Search in ModeBase
Nucleic Localization Signal ? help Back to Top
NLS
No. Start End Sequence
1133139KKKKKKK
Functional Description ? help Back to Top
Source Description
UniProtProbably acts as a transcriptional activator. Binds to the GCC-box pathogenesis-related promoter element. May be involved in the regulation of gene expression by stress factors and by components of stress signal transduction pathways (By similarity). {ECO:0000250}.
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_023733438.17e-50ethylene-responsive transcription factor ERF096-like
SwissprotQ9LTC52e-38ERF98_ARATH; Ethylene-responsive transcription factor ERF098
TrEMBLA0A2J6KGH72e-48A0A2J6KGH7_LACSA; Uncharacterized protein
STRINGGLYMA15G17090.12e-45(Glycine max)
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT1G04370.11e-24Ethylene-responsive element binding factor 14
Publications ? help Back to Top
  1. Van den Broeck L, et al.
    From network to phenotype: the dynamic wiring of an Arabidopsis transcriptional network induced by osmotic stress.
    Mol. Syst. Biol., 2017. 13(12): p. 961
    [PMID:29269383]