PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Home TFext BLAST Prediction Download Help About Links PlantRegMap |
Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | Kalax.0074s0042.1.p | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; Saxifragales; Crassulaceae; Kalanchoe
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Family | GATA | ||||||||
Protein Properties | Length: 145aa MW: 16094.5 Da PI: 8.8317 | ||||||||
Description | GATA family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | GATA | 59.2 | 5.4e-19 | 27 | 61 | 1 | 35 |
GATA 1 CsnCgttkTplWRrgpdgnktLCnaCGlyyrkkgl 35 C+ Cgt+kTplWR gp g+k+LCnaCG++ rkk++ Kalax.0074s0042.1.p 27 CVDCGTSKTPLWRGGPAGPKSLCNACGIRSRKKRR 61 ********************************986 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
SMART | SM00401 | 2.1E-12 | 21 | 78 | IPR000679 | Zinc finger, GATA-type |
SuperFamily | SSF57716 | 9.5E-13 | 22 | 61 | No hit | No description |
Gene3D | G3DSA:3.30.50.10 | 1.1E-15 | 25 | 61 | IPR013088 | Zinc finger, NHR/GATA-type |
CDD | cd00202 | 6.86E-12 | 27 | 61 | No hit | No description |
Pfam | PF00320 | 8.1E-17 | 27 | 61 | IPR000679 | Zinc finger, GATA-type |
PROSITE profile | PS50114 | 12.176 | 27 | 57 | IPR000679 | Zinc finger, GATA-type |
PROSITE pattern | PS00344 | 0 | 27 | 52 | IPR000679 | Zinc finger, GATA-type |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0006355 | Biological Process | regulation of transcription, DNA-templated | ||||
GO:0003700 | Molecular Function | transcription factor activity, sequence-specific DNA binding | ||||
GO:0008270 | Molecular Function | zinc ion binding | ||||
GO:0043565 | Molecular Function | sequence-specific DNA binding |
Sequence ? help Back to Top |
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Protein Sequence Length: 145 aa Download sequence Send to blast |
MVAEEQLCDS TDDQGLDCKE VSLKKLCVDC GTSKTPLWRG GPAGPKSLCN ACGIRSRKKR 60 RALLGFIKPD EKKEMDKKKS KHMVNNNNNI NESKNRSSCS NCYSESMFKC NILMKPHNVR 120 IEELNEEQQA AVLLMALSHG GFKS* |
Functional Description ? help Back to Top | ||||||
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Source | Description | |||||
UniProt | Transcriptional regulator that specifically binds 5'-GATA-3' or 5'-GAT-3' motifs within gene promoters. {ECO:0000250}. |
Regulation -- PlantRegMap ? help Back to Top | ||||||
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Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | - |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_012482165.1 | 2e-32 | PREDICTED: GATA transcription factor 15-like | ||||
Refseq | XP_016691171.1 | 2e-32 | PREDICTED: GATA transcription factor 15-like | ||||
Swissprot | Q8LG10 | 1e-25 | GAT15_ARATH; GATA transcription factor 15 | ||||
TrEMBL | A0A0D2RA28 | 4e-31 | A0A0D2RA28_GOSRA; Uncharacterized protein | ||||
TrEMBL | A0A1U8JLL6 | 5e-31 | A0A1U8JLL6_GOSHI; GATA transcription factor 15-like | ||||
TrEMBL | A0A2P5S659 | 4e-31 | A0A2P5S659_GOSBA; Uncharacterized protein | ||||
STRING | Gorai.005G065300.1 | 7e-32 | (Gossypium raimondii) |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT5G49300.1 | 2e-23 | GATA transcription factor 16 |
Link Out ? help Back to Top | |
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Phytozome | Kalax.0074s0042.1.p |
Publications ? help Back to Top | |||
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