PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
|
Home TFext BLAST Prediction Download Help About Links PlantRegMap |
Transcription Factor Information
Basic Information? help Back to Top | |||||||||
---|---|---|---|---|---|---|---|---|---|
TF ID | Kalax.0074s0010.1.p | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; Saxifragales; Crassulaceae; Kalanchoe
|
||||||||
Family | ERF | ||||||||
Protein Properties | Length: 155aa MW: 16403.9 Da PI: 6.7942 | ||||||||
Description | ERF family protein | ||||||||
Gene Model |
|
Signature Domain? help Back to Top | |||||||
---|---|---|---|---|---|---|---|
No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | AP2 | 65.7 | 9.5e-21 | 19 | 69 | 3 | 56 |
AP2 3 ykGVrwdkkrgrWvAeIrdpsengkrkrfslgkfgtaeeAakaaiaarkklege 56 y+GVr+++ +g+++AeIrd n++ r++lg+f+ta eAa+a+++a+ +++g+ Kalax.0074s0010.1.p 19 YRGVRRRP-WGKYAAEIRDS--NNQGVRVWLGTFDTALEAARAYDQAAYNMRGA 69 9*******.**********4..2345*************************995 PP |
Protein Features ? help Back to Top | ||||||
---|---|---|---|---|---|---|
Database | Entry ID | E-value | Start | End | InterPro ID | Description |
Pfam | PF00847 | 4.4E-15 | 18 | 68 | IPR001471 | AP2/ERF domain |
PROSITE profile | PS51032 | 22.84 | 18 | 76 | IPR001471 | AP2/ERF domain |
SMART | SM00380 | 3.7E-32 | 18 | 82 | IPR001471 | AP2/ERF domain |
Gene3D | G3DSA:3.30.730.10 | 2.8E-31 | 18 | 78 | IPR001471 | AP2/ERF domain |
CDD | cd00018 | 4.31E-27 | 19 | 76 | No hit | No description |
PRINTS | PR00367 | 6.7E-11 | 19 | 30 | IPR001471 | AP2/ERF domain |
SuperFamily | SSF54171 | 3.47E-22 | 19 | 77 | IPR016177 | DNA-binding domain |
PRINTS | PR00367 | 6.7E-11 | 42 | 58 | IPR001471 | AP2/ERF domain |
Gene Ontology ? help Back to Top | ||||||
---|---|---|---|---|---|---|
GO Term | GO Category | GO Description | ||||
GO:0009789 | Biological Process | positive regulation of abscisic acid-activated signaling pathway | ||||
GO:0010186 | Biological Process | positive regulation of cellular defense response | ||||
GO:0045893 | Biological Process | positive regulation of transcription, DNA-templated | ||||
GO:0090332 | Biological Process | stomatal closure | ||||
GO:0005634 | Cellular Component | nucleus | ||||
GO:0003700 | Molecular Function | transcription factor activity, sequence-specific DNA binding | ||||
GO:0043565 | Molecular Function | sequence-specific DNA binding |
Sequence ? help Back to Top |
---|
Protein Sequence Length: 155 aa Download sequence Send to blast |
MDSSNHVRNS SGGGGEVSYR GVRRRPWGKY AAEIRDSNNQ GVRVWLGTFD TALEAARAYD 60 QAAYNMRGAM AVLNFPKEYK LTPNGAVNNN AASSSGPGRT KEVIEFECLD DQVLEDMLAR 120 DDGPNGFGNV YTGGGGGGSN VHNGNVYSGG GHRL* |
3D Structure ? help Back to Top | ||||||
---|---|---|---|---|---|---|
PDB ID | Evalue | Query Start | Query End | Hit Start | Hit End | Description |
5wx9_A | 6e-34 | 18 | 125 | 14 | 126 | Ethylene-responsive transcription factor ERF096 |
Search in ModeBase |
Functional Description ? help Back to Top | ||||||
---|---|---|---|---|---|---|
Source | Description | |||||
UniProt | Probably acts as a transcriptional activator. Binds to the GCC-box pathogenesis-related promoter element. May be involved in the regulation of gene expression by stress factors and by components of stress signal transduction pathways (By similarity). {ECO:0000250}. |
Binding Motif ? help Back to Top | |||
---|---|---|---|
Motif ID | Method | Source | Motif file |
MP00029 | PBM | Transfer from AT5G43410 | Download |
Regulation -- PlantRegMap ? help Back to Top | ||||||
---|---|---|---|---|---|---|
Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | Retrieve |
Annotation -- Protein ? help Back to Top | |||||||
---|---|---|---|---|---|---|---|
Source | Hit ID | E-value | Description | ||||
Refseq | XP_023733438.1 | 2e-45 | ethylene-responsive transcription factor ERF096-like | ||||
Swissprot | Q9LSX0 | 9e-34 | ERF96_ARATH; Ethylene-responsive transcription factor ERF096 | ||||
TrEMBL | A0A2J6KGH7 | 5e-44 | A0A2J6KGH7_LACSA; Uncharacterized protein | ||||
STRING | GLYMA20G34560.1 | 2e-39 | (Glycine max) |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
---|---|---|---|---|---|---|
Hit ID | E-value | Description | ||||
AT5G43410.1 | 1e-34 | ERF family protein |
Link Out ? help Back to Top | |
---|---|
Phytozome | Kalax.0074s0010.1.p |
Publications ? help Back to Top | |||
---|---|---|---|
|