PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

Kalax.0073s0088.1.p

Organism

Kalanchoe marnieriana

Taxonomic ID

80907

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; Saxifragales; Crassulaceae; Kalanchoe

Family

MYB

Protein Properties

Length: 454aa MW: 50269.9 Da PI: 7.0385

Description

MYB family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
Kalax.0073s0088.1.p	genome	JGI	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	Myb_DNA-binding	54.6	2.6e-17	30	77	1	48
TSSS-HHHHHHHHHHHHHTTTT-HHHHHHHHTTTS-HHHHHHHHHHHT CS Myb_DNA-binding 1 rgrWTteEdellvdavkqlGggtWktIartmgkgRtlkqcksrwqkyl 48 +g+WT Ed +l+d+v+++G g+W+++ r g+ R++k+c++rw ++l Kalax.0073s0088.1.p 30 KGPWTSAEDAILIDYVRKHGEGNWNAVQRNSGLQRCGKSCRLRWANHL 77 79******************************************9986 PP
2	Myb_DNA-binding	50.2	5.8e-16	83	126	1	46
TSSS-HHHHHHHHHHHHHTTTT-HHHHHHHHTTTS-HHHHHHHHHH CS Myb_DNA-binding 1 rgrWTteEdellvdavkqlGggtWktIartmgkgRtlkqcksrwqk 46 +g++T++E+ l++++++++G++ W++ a+ m+ gRt++++k++w++ Kalax.0073s0088.1.p 83 KGAFTPDEERLILELHAKFGNK-WARMAAQMQ-GRTDNEIKNYWNT 126 799*****************.*****.*********97 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
PROSITE profile	PS51294	15.246	25	77	IPR017930	Myb domain
SuperFamily	SSF46689	5.24E-30	28	124	IPR009057	Homeodomain-like
SMART	SM00717	9.5E-14	29	79	IPR001005	SANT/Myb domain
Pfam	PF00249	9.4E-15	30	77	IPR001005	SANT/Myb domain
Gene3D	G3DSA:1.10.10.60	1.4E-23	31	84	IPR009057	Homeodomain-like
CDD	cd00167	3.01E-11	32	77	No hit	No description
PROSITE profile	PS51294	24.907	78	132	IPR017930	Myb domain
SMART	SM00717	1.9E-15	82	130	IPR001005	SANT/Myb domain
Pfam	PF00249	4.8E-15	83	126	IPR001005	SANT/Myb domain
Gene3D	G3DSA:1.10.10.60	6.2E-25	85	130	IPR009057	Homeodomain-like
CDD	cd00167	2.52E-11	85	126	No hit	No description

Gene Ontology ? help Back to Top
GO Term	GO Category	GO Description
GO:0003677	Molecular Function	DNA binding

Sequence ? help Back to Top
Protein Sequence Length: 454 aa Download sequence Send to blast
MMASSSSHGE TTTRSSGGGA AEEVVVALKK GPWTSAEDAI LIDYVRKHGE GNWNAVQRNS 60 GLQRCGKSCR LRWANHLRPD LKKGAFTPDE ERLILELHAK FGNKWARMAA QMQGRTDNEI 120 KNYWNTRMKR HQRAGLAIYP THIQSGHRQH RLQRHRKQQQ HAMKSTTSHT QMLDFQNQTA 180 INFNNPSSQS QPFLFTTHQV PIPSHHHQFN FFTEQKNAND QQSCDQTSLS SAAGSHSLFL 240 ANPLHQALEL KNNEPDSSAG IIGSSDFGLV HLSGSHMSSM QSVGCDDHRL SKANVSSGML 300 DDVYLNAVEF GNEKDESSYQ RLLLMPASKK MKDCGVTTPE NSNSGLTSIG MRVEEPAVVE 360 MNPLDDDELT SLLYSFPSAS PTPQWYRRGT TNNDNDSSGD AYGGVVLDLI HRPAMTLPDH 420 LMPPDPAANG QDLSLEGSPT STLMLWHNLP TIY*

Sequence ? help Back to Top

Protein Sequence Length: 454 aa Download sequence Send to blast

MMASSSSHGE TTTRSSGGGA AEEVVVALKK GPWTSAEDAI LIDYVRKHGE GNWNAVQRNS  60
GLQRCGKSCR LRWANHLRPD LKKGAFTPDE ERLILELHAK FGNKWARMAA QMQGRTDNEI  120
KNYWNTRMKR HQRAGLAIYP THIQSGHRQH RLQRHRKQQQ HAMKSTTSHT QMLDFQNQTA  180
INFNNPSSQS QPFLFTTHQV PIPSHHHQFN FFTEQKNAND QQSCDQTSLS SAAGSHSLFL  240
ANPLHQALEL KNNEPDSSAG IIGSSDFGLV HLSGSHMSSM QSVGCDDHRL SKANVSSGML  300
DDVYLNAVEF GNEKDESSYQ RLLLMPASKK MKDCGVTTPE NSNSGLTSIG MRVEEPAVVE  360
MNPLDDDELT SLLYSFPSAS PTPQWYRRGT TNNDNDSSGD AYGGVVLDLI HRPAMTLPDH  420
LMPPDPAANG QDLSLEGSPT STLMLWHNLP TIY*

3D Structure ? help Back to Top

PDB ID	Evalue	Query Start	Query End	Hit Start	Hit End	Description
1a5j_A	5e-28	28	130	5	106	B-MYB

Regulation -- PlantRegMap ? help Back to Top
Source	Upstream Regulator	Target Gene
PlantRegMap	Retrieve	-

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT2G32460.1	9e-70	myb domain protein 101

Link Out ? help Back to Top
Phytozome	Kalax.0073s0088.1.p