PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
|
Home TFext BLAST Prediction Download Help About Links PlantRegMap |
Transcription Factor Information
Basic Information? help Back to Top | |||||||||
---|---|---|---|---|---|---|---|---|---|
TF ID | Kalax.0073s0080.1.p | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; Saxifragales; Crassulaceae; Kalanchoe
|
||||||||
Family | WRKY | ||||||||
Protein Properties | Length: 572aa MW: 62713.4 Da PI: 6.2976 | ||||||||
Description | WRKY family protein | ||||||||
Gene Model |
|
Signature Domain? help Back to Top | |||||||
---|---|---|---|---|---|---|---|
No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | WRKY | 95.9 | 2.7e-30 | 325 | 383 | 2 | 59 |
--SS-EEEEEEE--TT-SS-EEEEEE-ST.T---EEEEEE-SSSTTEEEEEEES--SS- CS WRKY 2 dDgynWrKYGqKevkgsefprsYYrCtsa.gCpvkkkversaedpkvveitYegeHnhe 59 Dg++WrKYGqK+ kg+++pr+YYrCt+a gC+v+k+v+r+aed +++++tYeg+Hnh+ Kalax.0073s0080.1.p 325 TDGCQWRKYGQKMAKGNPCPRAYYRCTMAaGCTVRKQVQRCAEDRTILITTYEGNHNHP 383 7***************************99****************************7 PP |
Protein Features ? help Back to Top | ||||||
---|---|---|---|---|---|---|
Database | Entry ID | E-value | Start | End | InterPro ID | Description |
Gene3D | G3DSA:2.20.25.80 | 2.9E-33 | 309 | 385 | IPR003657 | WRKY domain |
SuperFamily | SSF118290 | 1.83E-27 | 317 | 385 | IPR003657 | WRKY domain |
PROSITE profile | PS50811 | 29.643 | 319 | 385 | IPR003657 | WRKY domain |
SMART | SM00774 | 6.8E-36 | 324 | 384 | IPR003657 | WRKY domain |
Pfam | PF03106 | 5.0E-26 | 326 | 383 | IPR003657 | WRKY domain |
Gene Ontology ? help Back to Top | ||||||
---|---|---|---|---|---|---|
GO Term | GO Category | GO Description | ||||
GO:0006355 | Biological Process | regulation of transcription, DNA-templated | ||||
GO:0003700 | Molecular Function | transcription factor activity, sequence-specific DNA binding | ||||
GO:0043565 | Molecular Function | sequence-specific DNA binding |
Sequence ? help Back to Top |
---|
Protein Sequence Length: 572 aa Download sequence Send to blast |
MDTTATTTTL NNTTTRPPSN PSPSIHFPLN LNHMNQQHDD HVDLRLNSNN DHHHQHGVID 60 EMDFFADDRT NKDGSNKQQS CTDFDHQNMN TPPADHQSTH FNYVNTGLHL LTANTSTTDQ 120 SMVDDGSSPT TDDTRAKNEI VMLRAEIERV DRENQELKEM LSHVTKSYST MQVHLMTLMG 180 ESQKKDAHAQ QQLHVKHRQE DKQQIEVGTS RLVQKQLMVD LGLVPASDIH DQQSLSSSEN 240 NEDGRSNSPP TNLEVASRLQ MEEEAEITRR EISMGMGREE EAVHVLPNKV PRFNPSKTNN 300 ADQAEATMRK ARVSVRARSE ATMITDGCQW RKYGQKMAKG NPCPRAYYRC TMAAGCTVRK 360 QVQRCAEDRT ILITTYEGNH NHPLPPAAMA MASTTSSAAH MLLSGSMSST DGLMNPNFLA 420 RTLLPCSSNM ATISASAPFP TVTLDLTQNP NAATQPQPNT IQSQFENPSQ NLALLPQLFS 480 QTLYNQSMFS GLQMSQHRDS SLGPKQQSPL ADSVTAAAIA ADPNFTAVIA AAISSMIGNS 540 HPINNITTNS SNSNGNNSGA NTVSSSGIPE N* |
3D Structure ? help Back to Top | ||||||
---|---|---|---|---|---|---|
PDB ID | Evalue | Query Start | Query End | Hit Start | Hit End | Description |
1wj2_A | 2e-21 | 315 | 385 | 8 | 77 | Probable WRKY transcription factor 4 |
2lex_A | 2e-21 | 315 | 385 | 8 | 77 | Probable WRKY transcription factor 4 |
Search in ModeBase |
Regulation -- PlantRegMap ? help Back to Top | ||||||
---|---|---|---|---|---|---|
Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | - |
Annotation -- Protein ? help Back to Top | |||||||
---|---|---|---|---|---|---|---|
Source | Hit ID | E-value | Description | ||||
Refseq | XP_023921697.1 | 1e-178 | probable WRKY transcription factor 31 | ||||
TrEMBL | A0A438IL69 | 1e-177 | A0A438IL69_VITVI; WRKY transcription factor 6 | ||||
TrEMBL | M1B7H2 | 1e-177 | M1B7H2_SOLTU; Uncharacterized protein | ||||
STRING | PGSC0003DMT400038852 | 1e-178 | (Solanum tuberosum) |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
---|---|---|---|---|---|---|
Hit ID | E-value | Description | ||||
AT1G62300.1 | 1e-114 | WRKY family protein |
Link Out ? help Back to Top | |
---|---|
Phytozome | Kalax.0073s0080.1.p |