PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Kalax.0073s0039.1.p
Organism
Kalanchoe marnieriana
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; Saxifragales; Crassulaceae; Kalanchoe
Family C2H2
Protein Properties Length: 468aa    MW: 51331.1 Da    PI: 9.6596
Description C2H2 family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Kalax.0073s0039.1.pgenomeJGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1zf-C2H219.82.2e-06249271223
                          EETTTTEEESSHHHHHHHHHH.T CS
              zf-C2H2   2 kCpdCgksFsrksnLkrHirt.H 23 
                          +CpdCg++F   +nL++H+ + H
  Kalax.0073s0039.1.p 249 SCPDCGEVFMKADNLETHQAVrH 271
                          8******************9888 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
Gene3DG3DSA:3.30.160.605.3E-5247267IPR013087Zinc finger C2H2-type/integrase DNA-binding domain
PROSITE patternPS000280248271IPR007087Zinc finger, C2H2
PROSITE profilePS501579.307248276IPR007087Zinc finger, C2H2
SuperFamilySSF563998.63E-19273465No hitNo description
Gene3DG3DSA:3.90.228.101.2E-9274465IPR012317Poly(ADP-ribose) polymerase, catalytic domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0003676Molecular Functionnucleic acid binding
GO:0003950Molecular FunctionNAD+ ADP-ribosyltransferase activity
GO:0046872Molecular Functionmetal ion binding
Sequence ? help Back to Top
Protein Sequence    Length: 468 aa     Download sequence    Send to blast
MANSTNSHHP NQPKIHQNKS KGQQQSKPEP KPEQKPNSPP LIISKRDLLK IPSTTTSKPA  60
PSWNVIRSIL SCKHIQTQGP QPQPQTPLQP QKLKQKQQHH IEPGESSNSS SSSEPKRFKK  120
MKCSGSICSN TKVIQRSDLL SSVGSSFHTI SSISETSNNA GSSSSSRSMK PPPTPRKEHG  180
HHHATNQSSN STPIPSSSSY HHNNNAGSGS GLKGIPLLRF TGCYECRMVV DPVVLGFTRD  240
PSLGSTVCSC PDCGEVFMKA DNLETHQAVR HAVSELGPED TSRNIVEIIF QSSWFKKQTP  300
VCKIDRILKV NNTPKKISNF ESYRESIKFK ANKTVKKHPR CIADGNELLR FHCTTLLCSL  360
GLNGSTNLCN SIPTCSVCSV IRNGFKLTEK GIWTTATSGK ADDKIEASSE KRAMLVCRVI  420
AGRVRRGNSE EFDSVSEGLE TYSSLDELYV FNQMAIMPCF VVIYGES*
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_008233905.21e-153PREDICTED: uncharacterized protein LOC103332917
TrEMBLA0A498HYJ41e-149A0A498HYJ4_MALDO; Uncharacterized protein
STRINGXP_008233905.11e-152(Prunus mume)
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT1G75710.14e-89C2H2-like zinc finger protein