PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Kalax.0072s0043.1.p
Organism
Kalanchoe marnieriana
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; Saxifragales; Crassulaceae; Kalanchoe
Family MYB
Protein Properties Length: 286aa    MW: 32626.4 Da    PI: 7.043
Description MYB family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Kalax.0072s0043.1.pgenomeJGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1Myb_DNA-binding271.1e-082670345
                         SS-HHHHHHHHHHHHHTTTT...-HHHHHHHHTTTS-HHHHHHHHH CS
      Myb_DNA-binding  3 rWTteEdellvdavkqlGgg...tWktIartmgkgRtlkqcksrwq 45
                          W+ eE +l+  a + + ++   +W+++a++++ g++  ++++ + 
  Kalax.0072s0043.1.p 26 YWSREENKLFESALAIYDKNtadRWEKVAQMIP-GKSVSDVINQYK 70
                         5********************************.*********997 PP
2Myb_DNA-binding40.65.8e-13126170347
                          SS-HHHHHHHHHHHHHTTTT-HHHHHHHHTTTS-HHHHHHHHHHH CS
      Myb_DNA-binding   3 rWTteEdellvdavkqlGggtWktIartmgkgRtlkqcksrwqky 47 
                          +WT++E+ +++ +  ++G g+W++I+r +   +t+ q+ s+ qky
  Kalax.0072s0043.1.p 126 PWTEDEHRRFLMGLLKHGRGDWRSISRNFVGSKTPTQVASHAQKY 170
                          8****************************999************9 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
Gene3DG3DSA:1.10.10.605.4E-42071IPR009057Homeodomain-like
PROSITE profilePS5129310.0632275IPR017884SANT domain
SMARTSM007171.3E-92375IPR001005SANT/Myb domain
SuperFamilySSF466898.22E-122580IPR009057Homeodomain-like
PfamPF002493.5E-72671IPR001005SANT/Myb domain
CDDcd001677.06E-92772No hitNo description
PROSITE profilePS5129416.278119175IPR017930Myb domain
SuperFamilySSF466893.14E-16121175IPR009057Homeodomain-like
SMARTSM007175.7E-10123173IPR001005SANT/Myb domain
TIGRFAMsTIGR015571.6E-16123173IPR006447Myb domain, plants
Gene3DG3DSA:1.10.10.601.2E-9123169IPR009057Homeodomain-like
CDDcd001675.73E-9126171No hitNo description
PfamPF002492.5E-10126170IPR001005SANT/Myb domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0003677Molecular FunctionDNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 286 aa     Download sequence    Send to blast
MTMETVYQTF QLQDSNWLPQ KSHGSYWSRE ENKLFESALA IYDKNTADRW EKVAQMIPGK  60
SVSDVINQYK ELEDDVSYIE AGLVPTPGYL TSSFTLELGD DRDFDALRKK SARARSADHE  120
KRKGVPWTED EHRRFLMGLL KHGRGDWRSI SRNFVGSKTP TQVASHAQKY FLRLNSGMRD  180
KRRPSIHDIT TTNITNPPPS DEFRVGAFDQ FLMLPPPDKE ASDNVVLDWN QHQNASAAAL  240
EPDNGNLFVP PAPYENLYAT AYHGLQVRPH NPMFEVQSAR QRIRG*
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
2cjj_A8e-1721108591RADIALIS
Search in ModeBase
Functional Description ? help Back to Top
Source Description
UniProtInvolved in the dorsovental asymmetry of flowers. Promotes ventral identity. {ECO:0000269|PubMed:11937495, ECO:0000269|PubMed:9118809}.
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_018821689.11e-110PREDICTED: transcription factor DIVARICATA-like
SwissprotQ8S9H75e-76DIV_ANTMA; Transcription factor DIVARICATA
TrEMBLA0A2N9H1W51e-111A0A2N9H1W5_FAGSY; Uncharacterized protein
STRINGEMJ204611e-107(Prunus persica)
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT2G38090.14e-74MYB family protein
Publications ? help Back to Top
  1. Galego L,Almeida J
    Role of DIVARICATA in the control of dorsoventral asymmetry in Antirrhinum flowers.
    Genes Dev., 2002. 16(7): p. 880-91
    [PMID:11937495]
  2. Almeida J,Rocheta M,Galego L
    Genetic control of flower shape in Antirrhinum majus.
    Development, 1997. 124(7): p. 1387-92
    [PMID:9118809]