PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Kalax.0071s0004.2.p
Organism
Kalanchoe marnieriana
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; Saxifragales; Crassulaceae; Kalanchoe
Family MIKC_MADS
Protein Properties Length: 242aa    MW: 27817 Da    PI: 8.6789
Description MIKC_MADS family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Kalax.0071s0004.2.pgenomeJGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1SRF-TF99.81e-31959151
                         S---SHHHHHHHHHHHHHHHHHHHHHHHHHHT-EEEEEEE-TTSEEEEEE- CS
               SRF-TF  1 krienksnrqvtfskRrngilKKAeELSvLCdaevaviifsstgklyeyss 51
                         krienk+nrqvtf+kRrng+lKKA+ELSvLCdaeva+iifs++gklye++s
  Kalax.0071s0004.2.p  9 KRIENKINRQVTFAKRRNGLLKKAYELSVLCDAEVALIIFSNRGKLYEFCS 59
                         79***********************************************96 PP
2K-box83.25.8e-28821739100
                K-box   9 leeakaeslqqelakLkkeienLqreqRhllGedLesLslkeLqqLeqqLekslkkiRskKnellleqieelqkkekelqeenkaLrkkl 98 
                            +++ es+++e+ kLk + e Lq +qR+llGedL++Ls keL+qLe+qLe+ lk iRs++++ +l+++ elq+ke +l e ++ L++kl
  Kalax.0071s0004.2.p  82 RPNKELESSYREYLKLKGKFEALQLTQRNLLGEDLGPLSTKELEQLEHQLESTLKLIRSTRTQCMLDKLAELQNKESALLESKRILEMKL 171
                          4678899**********************************************************************************9 PP

                K-box  99 ee 100
                          ee
  Kalax.0071s0004.2.p 172 EE 173
                          86 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS5006633.557161IPR002100Transcription factor, MADS-box
SMARTSM004321.3E-41160IPR002100Transcription factor, MADS-box
SuperFamilySSF554554.84E-34283IPR002100Transcription factor, MADS-box
CDDcd002653.02E-44276No hitNo description
PRINTSPR004048.5E-33323IPR002100Transcription factor, MADS-box
PROSITE patternPS003500357IPR002100Transcription factor, MADS-box
PfamPF003192.2E-261057IPR002100Transcription factor, MADS-box
PRINTSPR004048.5E-332338IPR002100Transcription factor, MADS-box
PRINTSPR004048.5E-333859IPR002100Transcription factor, MADS-box
PfamPF014863.2E-2285171IPR002487Transcription factor, K-box
PROSITE profilePS5129714.0587177IPR002487Transcription factor, K-box
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0009611Biological Processresponse to wounding
GO:0048481Biological Processplant ovule development
GO:0071486Biological Processcellular response to high light intensity
GO:0071492Biological Processcellular response to UV-A
GO:0005634Cellular Componentnucleus
GO:0003677Molecular FunctionDNA binding
GO:0003700Molecular Functiontranscription factor activity, sequence-specific DNA binding
GO:0046983Molecular Functionprotein dimerization activity
Sequence ? help Back to Top
Protein Sequence    Length: 242 aa     Download sequence    Send to blast
MGRGRVELKR IENKINRQVT FAKRRNGLLK KAYELSVLCD AEVALIIFSN RGKLYEFCST  60
NNMMKTLERY QKCSYGAVEV NRPNKELESS YREYLKLKGK FEALQLTQRN LLGEDLGPLS  120
TKELEQLEHQ LESTLKLIRS TRTQCMLDKL AELQNKESAL LESKRILEMK LEEMVPKNSF  180
RLSWEAGEQS MPYHQAQSHA LYQQLDCNPT LQIGYDQVAA DQMNATTSTH QVSGFIPGWM  240
L*
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
4ox0_A9e-30751711101Developmental protein SEPALLATA 3
4ox0_B9e-30751711101Developmental protein SEPALLATA 3
4ox0_C9e-30751711101Developmental protein SEPALLATA 3
4ox0_D9e-30751711101Developmental protein SEPALLATA 3
Search in ModeBase
Functional Description ? help Back to Top
Source Description
UniProtProbable transcription factor involved in flower development. {ECO:0000250|UniProtKB:Q0HA25}.
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_012088064.11e-137developmental protein SEPALLATA 1
SwissprotQ8LLR21e-131MADS2_VITVI; Agamous-like MADS-box protein MADS2
TrEMBLA0A067JK971e-136A0A067JK97_JATCU; Uncharacterized protein
STRINGEOY037911e-135(Theobroma cacao)
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT3G02310.11e-117MIKC_MADS family protein
Publications ? help Back to Top
  1. Jaillon O, et al.
    The grapevine genome sequence suggests ancestral hexaploidization in major angiosperm phyla.
    Nature, 2007. 449(7161): p. 463-7
    [PMID:17721507]
  2. Díaz-Riquelme J,Lijavetzky D,Martínez-Zapater JM,Carmona MJ
    Genome-wide analysis of MIKCC-type MADS box genes in grapevine.
    Plant Physiol., 2009. 149(1): p. 354-69
    [PMID:18997115]
  3. Grimplet J,Martínez-Zapater JM,Carmona MJ
    Structural and functional annotation of the MADS-box transcription factor family in grapevine.
    BMC Genomics, 2016. 17: p. 80
    [PMID:26818751]