PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
|
Home TFext BLAST Prediction Download Help About Links PlantRegMap |
Transcription Factor Information
Basic Information? help Back to Top | |||||||||
---|---|---|---|---|---|---|---|---|---|
TF ID | Kalax.0070s0082.1.p | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; Saxifragales; Crassulaceae; Kalanchoe
|
||||||||
Family | M-type_MADS | ||||||||
Protein Properties | Length: 220aa MW: 25365.8 Da PI: 6.2344 | ||||||||
Description | M-type_MADS family protein | ||||||||
Gene Model |
|
Signature Domain? help Back to Top | |||||||
---|---|---|---|---|---|---|---|
No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | SRF-TF | 25 | 2.4e-08 | 11 | 50 | 3 | 42 |
--SHHHHHHHHHHHHHHHHHHHHHHHHHHT-EEEEEEE-T CS SRF-TF 3 ienksnrqvtfskRrngilKKAeELSvLCdaevaviifss 42 i n++ r +f kRr ++ K +E+SvL + ++ +i+s+ Kalax.0070s0082.1.p 11 IPNYTARRASFRKRRDSLIRKLNEISVLAGGAACGVILSP 50 789***************************9999999986 PP |
Protein Features ? help Back to Top | ||||||
---|---|---|---|---|---|---|
Database | Entry ID | E-value | Start | End | InterPro ID | Description |
SMART | SM00432 | 1.0E-8 | 1 | 61 | IPR002100 | Transcription factor, MADS-box |
PROSITE profile | PS50066 | 14.129 | 1 | 49 | IPR002100 | Transcription factor, MADS-box |
SuperFamily | SSF55455 | 3.79E-16 | 2 | 93 | IPR002100 | Transcription factor, MADS-box |
CDD | cd00266 | 6.60E-21 | 2 | 83 | No hit | No description |
PRINTS | PR00404 | 2.1E-6 | 3 | 23 | IPR002100 | Transcription factor, MADS-box |
Pfam | PF00319 | 2.1E-7 | 11 | 50 | IPR002100 | Transcription factor, MADS-box |
PRINTS | PR00404 | 2.1E-6 | 23 | 38 | IPR002100 | Transcription factor, MADS-box |
Gene Ontology ? help Back to Top | ||||||
---|---|---|---|---|---|---|
GO Term | GO Category | GO Description | ||||
GO:0003677 | Molecular Function | DNA binding | ||||
GO:0046983 | Molecular Function | protein dimerization activity |
Sequence ? help Back to Top |
---|
Protein Sequence Length: 220 aa Download sequence Send to blast |
MTRKKIQLAW IPNYTARRAS FRKRRDSLIR KLNEISVLAG GAACGVILSP FEGDPPVFYP 60 QAINEIIDRF FSLPEFEQQK RMVTAESYIH DEISKLQEII QKEHKMIREA EVSYRMNSIH 120 FHGSHIATLS YDETSDLFWS FEEMKNKCEL RLNQLDPNAS APQPLHPETM MMQEPQMEMN 180 DPIWLSAGNP INASFPHPPP PFESHHQAAD FYNNNNTGY* |
Nucleic Localization Signal ? help Back to Top | |||
---|---|---|---|
No. | Start | End | Sequence |
1 | 2 | 24 | RKKIQLAWIPNYTARRASFRKRR |
Regulation -- PlantRegMap ? help Back to Top | ||||||
---|---|---|---|---|---|---|
Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | - |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
---|---|---|---|---|---|---|
Hit ID | E-value | Description | ||||
AT3G05860.2 | 1e-24 | M-type_MADS family protein |
Link Out ? help Back to Top | |
---|---|
Phytozome | Kalax.0070s0082.1.p |