PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Kalax.0070s0080.1.p
Organism
Kalanchoe marnieriana
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; Saxifragales; Crassulaceae; Kalanchoe
Family M-type_MADS
Protein Properties Length: 219aa    MW: 25228.8 Da    PI: 7.733
Description M-type_MADS family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Kalax.0070s0080.1.pgenomeJGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1SRF-TF25.91.3e-081150342
                         --SHHHHHHHHHHHHHHHHHHHHHHHHHHT-EEEEEEE-T CS
               SRF-TF  3 ienksnrqvtfskRrngilKKAeELSvLCdaevaviifss 42
                         i n++ r + f kRr  ++ K +E+SvL +  ++ +i+s+
  Kalax.0070s0080.1.p 11 IPNYTARRTAFRKRRDSLIRKLNEISVLAGGAACGVILSP 50
                         789***************************9999999986 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SMARTSM004324.4E-9161IPR002100Transcription factor, MADS-box
PROSITE profilePS5006613.736149IPR002100Transcription factor, MADS-box
SuperFamilySSF554554.45E-16180IPR002100Transcription factor, MADS-box
CDDcd002661.14E-19283No hitNo description
PRINTSPR004043.3E-6323IPR002100Transcription factor, MADS-box
PfamPF003193.7E-71150IPR002100Transcription factor, MADS-box
PRINTSPR004043.3E-62338IPR002100Transcription factor, MADS-box
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0003677Molecular FunctionDNA binding
GO:0046983Molecular Functionprotein dimerization activity
Sequence ? help Back to Top
Protein Sequence    Length: 219 aa     Download sequence    Send to blast
MTRKKVQLAW IPNYTARRTA FRKRRDSLIR KLNEISVLAG GAACGVILSP FEGDPPLFWP  60
PSINEVLERF FSLRELEQQK RLVTVESYIN DEVSKLKQII QKEHKVIREA EVSYLMNSIH  120
FHGSPIATLR YDETSDLFWY FEELKNKCEL RLNQLDPNAS ATQPLHPGIT MMQESQMGIN  180
DPTWLTTGNP INAPFPHPPP QFESHHQVGG FYNNNTWH*
Nucleic Localization Signal ? help Back to Top
NLS
No. Start End Sequence
1224RKKVQLAWIPNYTARRTAFRKRR
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT3G05860.25e-24M-type_MADS family protein