PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Home TFext BLAST Prediction Download Help About Links PlantRegMap |
Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | Kalax.0070s0069.1.p | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; Saxifragales; Crassulaceae; Kalanchoe
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Family | ERF | ||||||||
Protein Properties | Length: 342aa MW: 37177.5 Da PI: 6.5723 | ||||||||
Description | ERF family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | AP2 | 62.4 | 1e-19 | 24 | 74 | 2 | 56 |
AP2 2 gykGVrwdkkrgrWvAeIrdpseng.krkrfslgkfgtaeeAakaaiaarkklege 56 +y GVr+++ +grWvAeI+d ++ r +lg+f+tae+Aa+a+++a+++l+g+ Kalax.0070s0069.1.p 24 KYVGVRQRP-SGRWVAEIKD----SlQKVRLWLGTFDTAEDAARAYDEAARSLRGA 74 8********.7*********....4456*************************995 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
Pfam | PF00847 | 1.2E-13 | 24 | 73 | IPR001471 | AP2/ERF domain |
Gene3D | G3DSA:3.30.730.10 | 9.8E-30 | 24 | 81 | IPR001471 | AP2/ERF domain |
CDD | cd00018 | 7.64E-31 | 24 | 81 | No hit | No description |
SMART | SM00380 | 4.3E-36 | 24 | 87 | IPR001471 | AP2/ERF domain |
SuperFamily | SSF54171 | 2.81E-20 | 24 | 81 | IPR016177 | DNA-binding domain |
PROSITE profile | PS51032 | 20.916 | 24 | 81 | IPR001471 | AP2/ERF domain |
PRINTS | PR00367 | 3.3E-8 | 25 | 36 | IPR001471 | AP2/ERF domain |
PRINTS | PR00367 | 3.3E-8 | 47 | 63 | IPR001471 | AP2/ERF domain |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0006355 | Biological Process | regulation of transcription, DNA-templated | ||||
GO:0003677 | Molecular Function | DNA binding | ||||
GO:0003700 | Molecular Function | transcription factor activity, sequence-specific DNA binding |
Sequence ? help Back to Top |
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Protein Sequence Length: 342 aa Download sequence Send to blast |
MGVPGQPTII KSAKKKASSR GHHKYVGVRQ RPSGRWVAEI KDSLQKVRLW LGTFDTAEDA 60 ARAYDEAARS LRGANARTNF ELPPQMKNGR GGFLRPLTEW AEPFSFELEC GTSDDARGGL 120 IAALKAKLLD GKGADGAVSL PHMSGSSRIK ANHDTGLLRK HVDGPKMRQQ TTDRIAQSII 180 INPNPPTPVQ DSCLLKFSKS DMPIDHDDHD DLIASAAAQW ADQANHTAQL EHVVWPLADP 240 WNNTQMTMSH FHQEESLFLS HSNGSSSGSS AGWPLAVTTD TSAQFPYHNQ SDPVELAPSV 300 IDAACIWPEQ QFAQSDNNNA WGCSANGSFD QLLYLSSMLL G* |
3D Structure ? help Back to Top | ||||||
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PDB ID | Evalue | Query Start | Query End | Hit Start | Hit End | Description |
5wx9_A | 5e-16 | 22 | 89 | 12 | 80 | Ethylene-responsive transcription factor ERF096 |
Regulation -- PlantRegMap ? help Back to Top | ||||||
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Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | - |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT5G19790.1 | 8e-18 | related to AP2 11 |
Link Out ? help Back to Top | |
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Phytozome | Kalax.0070s0069.1.p |