PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | Kalax.0069s0011.1.p | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; Saxifragales; Crassulaceae; Kalanchoe
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Family | RAV | ||||||||
Protein Properties | Length: 360aa MW: 39717.7 Da PI: 9.79 | ||||||||
Description | RAV family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | AP2 | 40.2 | 8.4e-13 | 72 | 120 | 1 | 55 |
AP2 1 sgykGVrwdkkrgrWvAeIrdpsengkrkrfslgkfgtaeeAakaaiaarkkleg 55 s++kGV + +grW A+I++ ++r++lg+f+ ++eAa+ ++ a+++++g Kalax.0069s0011.1.p 72 SRFKGVVPQP-NGRWGAQIYEK-----HQRVWLGTFDEEDEAARVYDLAAQRFRG 120 689***9788.8*********3.....5**********99*************98 PP | |||||||
2 | B3 | 96.7 | 1.5e-30 | 194 | 297 | 1 | 93 |
EEEE-..-HHHHTT-EE--HHH.HTT.........---..--SEEEEEETTS-EEEEEE..EEETTEEEE-TTHHHHHHHHT--TT-EEE CS B3 1 ffkvltpsdvlksgrlvlpkkfaeeh.........ggkkeesktltledesgrsWevkliyrkksgryvltkGWkeFvkangLkegDfvv 81 f+k+ tpsdv+k++rlv+pk++ae+h ++++++ l +ed g++W+++++y+++s++yvltkGW++Fvk+++L +gD+v Kalax.0069s0011.1.p 194 FEKAVTPSDVGKLNRLVIPKQHAEKHfqlqsrgspAASSAKGVLLNFEDAGGKVWRFRYSYWNSSQSYVLTKGWSRFVKEKNLHAGDVVR 283 89*************************999988775556699************************************************ PP EEE-.SS.SEE..E CS B3 82 Fkld.gr.sefelv 93 F+ + g ++++l+ Kalax.0069s0011.1.p 284 FYKStGAaDRTQLH 297 *9443444555555 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
Pfam | PF00847 | 7.2E-8 | 72 | 120 | IPR001471 | AP2/ERF domain |
SuperFamily | SSF54171 | 1.57E-15 | 72 | 128 | IPR016177 | DNA-binding domain |
CDD | cd00018 | 9.99E-23 | 72 | 128 | No hit | No description |
Gene3D | G3DSA:3.30.730.10 | 6.1E-18 | 73 | 128 | IPR001471 | AP2/ERF domain |
SMART | SM00380 | 1.9E-26 | 73 | 134 | IPR001471 | AP2/ERF domain |
PROSITE profile | PS51032 | 19.493 | 73 | 128 | IPR001471 | AP2/ERF domain |
Gene3D | G3DSA:2.40.330.10 | 7.5E-37 | 190 | 290 | IPR015300 | DNA-binding pseudobarrel domain |
SuperFamily | SSF101936 | 1.23E-28 | 191 | 287 | IPR015300 | DNA-binding pseudobarrel domain |
CDD | cd10017 | 8.12E-28 | 192 | 287 | No hit | No description |
PROSITE profile | PS50863 | 13.817 | 194 | 304 | IPR003340 | B3 DNA binding domain |
SMART | SM01019 | 8.4E-21 | 194 | 304 | IPR003340 | B3 DNA binding domain |
Pfam | PF02362 | 1.2E-27 | 194 | 297 | IPR003340 | B3 DNA binding domain |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0006355 | Biological Process | regulation of transcription, DNA-templated | ||||
GO:0003677 | Molecular Function | DNA binding | ||||
GO:0003700 | Molecular Function | transcription factor activity, sequence-specific DNA binding |
Sequence ? help Back to Top |
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Protein Sequence Length: 360 aa Download sequence Send to blast |
MDLNCPVDTG STATDDSSST SSSLIIISPT SPPLTPTAPK TTHVNPLSRM GSGASVVIDA 60 EAESSGRRLV SSRFKGVVPQ PNGRWGAQIY EKHQRVWLGT FDEEDEAARV YDLAAQRFRG 120 RDAVTNYEPL ATDEAGSVEY SFLTSHSKAE IVDMLRKHTY AEELEQRKRH SASHASRPDP 180 RLSLGSGLAR EPLFEKAVTP SDVGKLNRLV IPKQHAEKHF QLQSRGSPAA SSAKGVLLNF 240 EDAGGKVWRF RYSYWNSSQS YVLTKGWSRF VKEKNLHAGD VVRFYKSTGA ADRTQLHIDF 300 KSRTALMMIT ASQPSYATTA APNCAVVRLF GVNIVKSSDD NKRKMEMELL GFETCKSRR* |
3D Structure ? help Back to Top | ||||||
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PDB ID | Evalue | Query Start | Query End | Hit Start | Hit End | Description |
1wid_A | 5e-51 | 191 | 315 | 11 | 128 | DNA-binding protein RAV1 |
Search in ModeBase |
Functional Description ? help Back to Top | ||||||
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Source | Description | |||||
UniProt | Binds specifically to bipartite recognition sequences composed of two unrelated motifs, 5'-CAACA-3' and 5'-CACCTG-3'. May function as negative regulator of plant growth and development. {ECO:0000269|PubMed:15040885, ECO:0000269|PubMed:9862967}. |
Regulation -- Description ? help Back to Top | ||||||
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Source | Description | |||||
UniProt | INDUCTION: Down-regulated by brassinosteroid and zeatin. {ECO:0000269|PubMed:15040885}. |
Regulation -- PlantRegMap ? help Back to Top | ||||||
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Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | - |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_002524409.1 | 1e-139 | AP2/ERF and B3 domain-containing transcription factor RAV1 | ||||
Swissprot | Q9ZWM9 | 1e-123 | RAV1_ARATH; AP2/ERF and B3 domain-containing transcription factor RAV1 | ||||
TrEMBL | B9SEJ0 | 1e-138 | B9SEJ0_RICCO; DNA-binding protein RAV1, putative | ||||
STRING | XP_002524409.1 | 1e-139 | (Ricinus communis) |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT1G13260.1 | 1e-121 | related to ABI3/VP1 1 |
Link Out ? help Back to Top | |
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Phytozome | Kalax.0069s0011.1.p |
Publications ? help Back to Top | |||
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