PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | Kalax.0068s0076.3.p | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; Saxifragales; Crassulaceae; Kalanchoe
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Family | bHLH | ||||||||
Protein Properties | Length: 528aa MW: 58550.9 Da PI: 4.9021 | ||||||||
Description | bHLH family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | HLH | 45.6 | 1.3e-14 | 328 | 374 | 4 | 55 |
HHHHHHHHHHHHHHHHHHHHHCTSCCC...TTS-STCHHHHHHHHHHHHHHH CS HLH 4 ahnerErrRRdriNsafeeLrellPkaskapskKlsKaeiLekAveYIksLq 55 +h +ErrRR+++N++f Lr+l+P +K++Ka+iL ++eY+k+L+ Kalax.0068s0076.3.p 328 NHVLAERRRREKLNERFVILRSLVPFV-----TKMDKASILGDTIEYLKQLR 374 7999**********************8.....8*****************95 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
Pfam | PF14215 | 1.6E-11 | 4 | 43 | IPR025610 | Transcription factor MYC/MYB N-terminal |
SuperFamily | SSF47459 | 3.93E-19 | 324 | 392 | IPR011598 | Myc-type, basic helix-loop-helix (bHLH) domain |
PROSITE profile | PS50888 | 17.79 | 324 | 373 | IPR011598 | Myc-type, basic helix-loop-helix (bHLH) domain |
CDD | cd00083 | 3.42E-16 | 327 | 378 | No hit | No description |
Pfam | PF00010 | 3.4E-12 | 328 | 373 | IPR011598 | Myc-type, basic helix-loop-helix (bHLH) domain |
Gene3D | G3DSA:4.10.280.10 | 1.0E-18 | 328 | 391 | IPR011598 | Myc-type, basic helix-loop-helix (bHLH) domain |
SMART | SM00353 | 1.3E-17 | 330 | 379 | IPR011598 | Myc-type, basic helix-loop-helix (bHLH) domain |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0046983 | Molecular Function | protein dimerization activity |
Sequence ? help Back to Top |
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Protein Sequence Length: 528 aa Download sequence Send to blast |
MDDQSARVQT VLCIPVADGV VEFGSTEMIQ EDLGLVRHVK TFFHDYNRSQ LAPPPKPALS 60 GHSTSNPATS SQCFHSPPPF AGMSSNNNHS NPGNNDEDED EEEENEEPGG LDSEAGTGRV 120 SGRVAGEVSE LMQMEISDLD IRVRSPEDAS NNLEPDFNVL PASRIQKNKD DGHFTTESYK 180 IDSARRWALM QNQMRTGGVH LLQPPPFSET QLLEDLTQED SHYSHTVSSI LHHHQQPPLP 240 ESFFSAEDLI LSADSAFAKW TLYGDQVAAT TTGGAGSQWL LKFILFTVPY LHGKYPEENE 300 PCKSADMSEA AQQLKKGAGA PQEDMSVNHV LAERRRREKL NERFVILRSL VPFVTKMDKA 360 SILGDTIEYL KQLRRKIQDL EVKAKQMEVE QRSGLTSQDR TWSGTGSEKR KMRAVEVTGS 420 PKPVTVVEPP PPPPPVELLG LMDANTVQVS IIETDALVEL QCPYREALLL DVMMKLRDLR 480 IEVTAVQSSV TDGSFVAELR AKVKENVNGK KMKIAEVKRA IYQIIPE* |
3D Structure ? help Back to Top | ||||||
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PDB ID | Evalue | Query Start | Query End | Hit Start | Hit End | Description |
5gnj_A | 2e-14 | 327 | 377 | 7 | 57 | Transcription factor MYC2 |
5gnj_B | 2e-14 | 327 | 377 | 7 | 57 | Transcription factor MYC2 |
5gnj_E | 2e-14 | 327 | 377 | 7 | 57 | Transcription factor MYC2 |
5gnj_F | 2e-14 | 327 | 377 | 7 | 57 | Transcription factor MYC2 |
5gnj_G | 2e-14 | 327 | 377 | 7 | 57 | Transcription factor MYC2 |
5gnj_I | 2e-14 | 327 | 377 | 7 | 57 | Transcription factor MYC2 |
5gnj_M | 2e-14 | 327 | 377 | 7 | 57 | Transcription factor MYC2 |
5gnj_N | 2e-14 | 327 | 377 | 7 | 57 | Transcription factor MYC2 |
Search in ModeBase |
Nucleic Localization Signal ? help Back to Top | |||
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No. | Start | End | Sequence |
1 | 332 | 337 | ERRRRE |
2 | 333 | 338 | RRRREK |
Regulation -- PlantRegMap ? help Back to Top | ||||||
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Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | - |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_021279540.1 | 1e-159 | basic helix-loop-helix protein A | ||||
TrEMBL | A0A0C7DV44 | 1e-161 | A0A0C7DV44_RIBNI; BHLH3 protein (Fragment) | ||||
STRING | EOX94796 | 1e-157 | (Theobroma cacao) |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT4G09820.1 | 2e-53 | bHLH family protein |
Link Out ? help Back to Top | |
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Phytozome | Kalax.0068s0076.3.p |