PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
Home  TFext  BLAST  Prediction  Download  Help  About  Links  PlantRegMap
(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Kalax.0067s0044.1.p
Organism
Kalanchoe marnieriana
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; Saxifragales; Crassulaceae; Kalanchoe
Family GATA
Protein Properties Length: 271aa    MW: 29552.7 Da    PI: 9.9304
Description GATA family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Kalax.0067s0044.1.pgenomeJGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1GATA46.54.9e-15162197134
                 GATA   1 CsnCgttk..TplWRrgpdgnktLCnaCGlyyrkkg 34 
                          C++Cg+ +  Tp +Rrgp g++tLCnaCGl+++ k 
  Kalax.0067s0044.1.p 162 CQHCGVGEnsTPAMRRGPAGPRTLCNACGLMWANKA 197
                          *****99889**********************9875 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS513209.004742IPR010399Tify domain
PfamPF062001.3E-41435IPR010399Tify domain
PfamPF062031.6E-1274116IPR010402CCT domain
PROSITE profilePS5101712.02574116IPR010402CCT domain
SMARTSM004011.1E-5156212IPR000679Zinc finger, GATA-type
SuperFamilySSF577161.05E-8159196No hitNo description
Gene3DG3DSA:3.30.50.101.2E-12161196IPR013088Zinc finger, NHR/GATA-type
CDDcd002022.43E-12161213No hitNo description
PfamPF003206.9E-13162197IPR000679Zinc finger, GATA-type
PROSITE patternPS003440162189IPR000679Zinc finger, GATA-type
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0003700Molecular Functiontranscription factor activity, sequence-specific DNA binding
GO:0005515Molecular Functionprotein binding
GO:0008270Molecular Functionzinc ion binding
GO:0043565Molecular Functionsequence-specific DNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 271 aa     Download sequence    Send to blast
MGSGAAGSGR MSVLSLSFEG EVYVFPAVTP EKVAAELRAF ACKVPTGAPI PSACVPLDLS  60
SKGDNTKPSN FSRRVASLVR FREKRKKKCF DKKIRYTVRE EVAQRMHRKN GQFASVKANS  120
AVVSWDSVQS DGHQRRHYSS TRSHVSLTPQ ILEMTFICRL ICQHCGVGEN STPAMRRGPA  180
GPRTLCNACG LMWANKASQI WGMLRDLSKG GKNASLSQTA SCSSRECLLD VKISFANKGH  240
ISTNHDQHIF AEAASIVNKG NDVSFIDGDE E
Functional Description ? help Back to Top
Source Description
UniProtTranscriptional activator that specifically binds 5'-GATA-3' or 5'-GAT-3' motifs within gene promoters. {ECO:0000250, ECO:0000269|PubMed:14966217}.
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_006433794.11e-83GATA transcription factor 24 isoform X1
RefseqXP_024039692.11e-83GATA transcription factor 24 isoform X1
RefseqXP_024039693.11e-83GATA transcription factor 24 isoform X1
SwissprotQ8H1G03e-51GAT28_ARATH; GATA transcription factor 28
TrEMBLA0A067GNE43e-82A0A067GNE4_CITSI; Uncharacterized protein
TrEMBLA0A067H0M32e-82A0A067H0M3_CITSI; Uncharacterized protein
TrEMBLV4V5083e-82V4V508_9ROSI; Uncharacterized protein
STRINGXP_006433794.15e-83(Citrus clementina)
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT1G51600.23e-40ZIM-LIKE 2