PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
|
Home TFext BLAST Prediction Download Help About Links PlantRegMap |
Transcription Factor Information
Basic Information? help Back to Top | |||||||||
---|---|---|---|---|---|---|---|---|---|
TF ID | Kalax.0066s0063.2.p | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; Saxifragales; Crassulaceae; Kalanchoe
|
||||||||
Family | bHLH | ||||||||
Protein Properties | Length: 455aa MW: 49326.6 Da PI: 5.9808 | ||||||||
Description | bHLH family protein | ||||||||
Gene Model |
|
Signature Domain? help Back to Top | |||||||
---|---|---|---|---|---|---|---|
No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | HLH | 50 | 5.5e-16 | 287 | 333 | 4 | 55 |
HHHHHHHHHHHHHHHHHHHHHCTSCCC...TTS-STCHHHHHHHHHHHHHHH CS HLH 4 ahnerErrRRdriNsafeeLrellPkaskapskKlsKaeiLekAveYIksLq 55 hn ErrRRdriN+++ L+el+P + K +Ka++L A+eY+ksLq Kalax.0066s0063.2.p 287 VHNLSERRRRDRINEKMKALQELIPRC-----NKSDKASMLDDAIEYLKSLQ 333 6*************************8.....6******************9 PP |
Protein Features ? help Back to Top | ||||||
---|---|---|---|---|---|---|
Database | Entry ID | E-value | Start | End | InterPro ID | Description |
SuperFamily | SSF47459 | 1.44E-20 | 281 | 349 | IPR011598 | Myc-type, basic helix-loop-helix (bHLH) domain |
PROSITE profile | PS50888 | 17.987 | 283 | 332 | IPR011598 | Myc-type, basic helix-loop-helix (bHLH) domain |
CDD | cd00083 | 3.19E-17 | 286 | 337 | No hit | No description |
Pfam | PF00010 | 1.3E-13 | 287 | 333 | IPR011598 | Myc-type, basic helix-loop-helix (bHLH) domain |
Gene3D | G3DSA:4.10.280.10 | 6.2E-21 | 287 | 342 | IPR011598 | Myc-type, basic helix-loop-helix (bHLH) domain |
SMART | SM00353 | 3.8E-18 | 289 | 338 | IPR011598 | Myc-type, basic helix-loop-helix (bHLH) domain |
Gene Ontology ? help Back to Top | ||||||
---|---|---|---|---|---|---|
GO Term | GO Category | GO Description | ||||
GO:0006355 | Biological Process | regulation of transcription, DNA-templated | ||||
GO:0006783 | Biological Process | heme biosynthetic process | ||||
GO:0009740 | Biological Process | gibberellic acid mediated signaling pathway | ||||
GO:0009959 | Biological Process | negative gravitropism | ||||
GO:0010100 | Biological Process | negative regulation of photomorphogenesis | ||||
GO:0010161 | Biological Process | red light signaling pathway | ||||
GO:0010187 | Biological Process | negative regulation of seed germination | ||||
GO:0015995 | Biological Process | chlorophyll biosynthetic process | ||||
GO:0005634 | Cellular Component | nucleus | ||||
GO:0003677 | Molecular Function | DNA binding | ||||
GO:0003700 | Molecular Function | transcription factor activity, sequence-specific DNA binding | ||||
GO:0010313 | Molecular Function | phytochrome binding | ||||
GO:0042802 | Molecular Function | identical protein binding | ||||
GO:0046983 | Molecular Function | protein dimerization activity |
Sequence ? help Back to Top |
---|
Protein Sequence Length: 455 aa Download sequence Send to blast |
MANHCVPNFD MDDEYPIPSS SAPFRPSRKS SMQEDEVMEL LWQNGQIVMQ RAGSKPQQPR 60 PTFPVASGEA RDPPAPPPLF IHEDEMASWL HYPLDDPSFD RDFCTDLLYP SASCADTAVT 120 DPIPETRPPP PPLPPPPRPP IPPARTQGFG HFSRLRPRHE AGPSKAGDGS VSVTVVESNV 180 TPAAAPPESR ESQAAGDVGG GGRGLVAGSS SVGGGLETTS LDFTVASSSG ASGAEPDFKS 240 SATEDKKRKG READDTECHS QEDVPKAADA KKQVRGSTAK RTRAAEVHNL SERRRRDRIN 300 EKMKALQELI PRCNKSDKAS MLDDAIEYLK SLQLQVQMMS MGCGMVPMMF TGMQQYMQPM 360 GMGLGVDPNR PVMPFPMATP THLAPRFPVP SYNHLPLPPF VANAVHPMAA QYQPYLGYQT 420 MPMQPSQIEV MATQNARKPN HSTGPETTEE PQPG* |
Nucleic Localization Signal ? help Back to Top | |||
---|---|---|---|
No. | Start | End | Sequence |
1 | 291 | 296 | ERRRRD |
Binding Motif ? help Back to Top | |||
---|---|---|---|
Motif ID | Method | Source | Motif file |
MP00074 | ChIP-chip | Transfer from AT2G20180 | Download |
Regulation -- PlantRegMap ? help Back to Top | ||||||
---|---|---|---|---|---|---|
Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | Retrieve |
Annotation -- Protein ? help Back to Top | |||||||
---|---|---|---|---|---|---|---|
Source | Hit ID | E-value | Description | ||||
Refseq | XP_012085172.1 | 1e-115 | transcription factor PIF1 isoform X2 | ||||
Refseq | XP_028065178.1 | 1e-116 | transcription factor PIF1-like isoform X2 | ||||
TrEMBL | A0A2R6PQ62 | 1e-121 | A0A2R6PQ62_ACTCH; Transcription factor like | ||||
STRING | EOX94041 | 1e-112 | (Theobroma cacao) |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
---|---|---|---|---|---|---|
Hit ID | E-value | Description | ||||
AT2G20180.3 | 7e-59 | phytochrome interacting factor 3-like 5 |
Link Out ? help Back to Top | |
---|---|
Phytozome | Kalax.0066s0063.2.p |