PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Kalax.0065s0086.1.p
Organism
Kalanchoe marnieriana
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; Saxifragales; Crassulaceae; Kalanchoe
Family HD-ZIP
Protein Properties Length: 816aa    MW: 88717.8 Da    PI: 6.2449
Description HD-ZIP family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Kalax.0065s0086.1.pgenomeJGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1Homeobox65.85.7e-21120175156
                          TT--SS--HHHHHHHHHHHHHSSS--HHHHHHHHHHCTS-HHHHHHHHHHHHHHHH CS
             Homeobox   1 rrkRttftkeqleeLeelFeknrypsaeereeLAkklgLterqVkvWFqNrRakek 56 
                          +++ +++t++q++eLe+lF+++++p++++r +L+k+l+L++rqVk+WFqNrR+++k
  Kalax.0065s0086.1.p 120 KKRYHRHTPQQIQELEALFKECPHPDEKQRLHLSKRLSLETRQVKFWFQNRRTQMK 175
                          688999***********************************************999 PP
2START212.41.6e-663295521205
                          HHHHHHHHHHHHHHHHC-TT-EEEE....EXCCTTEEEEEEESSS......SCEEEEEEEECCSCHHHHHHHHHCCCGGCT-TT-S.... CS
                START   1 elaeeaaqelvkkalaeepgWvkss....esengdevlqkfeeskv.....dsgealrasgvvdmvlallveellddkeqWdetla.... 77 
                          e+a++a++el+k+a+++ep+W kss    e++n++e+l++f++  +     + +ea+r++gvv+ ++  lve+l+d++ +W e+++    
  Kalax.0065s0086.1.p 329 EVALAAMDELIKLAQSDEPLWIKSSdggrEILNREEYLRTFTPCMGmkpngYVTEASRETGVVIINSLALVETLMDTA-RWAEMFPcmia 417
                          6899*************************************9987799999***************************.*********** PP

                          EEEEEEEECTT......EEEEEEEEXXTTXX-SSX.EEEEEEEEEEE.TTS-EEEEEEEEE-TTS--.-TTSEE-EESSEEEEEEEECTC CS
                START  78 kaetlevissg......galqlmvaelqalsplvp.RdfvfvRyirqlgagdwvivdvSvdseqkppesssvvRaellpSgiliepksng 160
                          +a+t+evissg      g lqlm+aelq+lsplvp R+++f+R+++q+ +g+w++vdvS++s  + +  + +v++++lpSg+l+e+++ng
  Kalax.0065s0086.1.p 418 RAATIEVISSGmggtrnGSLQLMQAELQVLSPLVPvREVTFLRFCKQHAEGVWAVVDVSIESVHDTSGAPTYVKCRRLPSGCLLEDMPNG 507
                          *****************************************************************999********************** PP

                          EEEEEEEE-EE--SSXXHHHHHHHHHHHHHHHHHHHHHHTXXXXX CS
                START 161 hskvtwvehvdlkgrlphwllrslvksglaegaktwvatlqrqce 205
                           skvtwveh++++++ +h+l+r+l++sgl +gak+wva lqrq +
  Kalax.0065s0086.1.p 508 CSKVTWVEHAEYDESEVHQLYRPLLSSGLGFGAKRWVAMLQRQSQ 552
                          ******************************************976 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SuperFamilySSF466895.99E-21102177IPR009057Homeodomain-like
Gene3DG3DSA:1.10.10.601.3E-21107171IPR009057Homeodomain-like
PROSITE profilePS5007117.75117177IPR001356Homeobox domain
SMARTSM003893.8E-19118181IPR001356Homeobox domain
PfamPF000461.8E-18120175IPR001356Homeobox domain
CDDcd000861.14E-18120177No hitNo description
PROSITE patternPS000270152175IPR017970Homeobox, conserved site
PROSITE profilePS5084844.917320556IPR002913START domain
SuperFamilySSF559613.77E-35323553No hitNo description
CDDcd088751.66E-124324552No hitNo description
SMARTSM002349.2E-55329553IPR002913START domain
PfamPF018521.7E-58329552IPR002913START domain
Gene3DG3DSA:3.30.530.202.8E-4370519IPR023393START-like domain
SuperFamilySSF559614.58E-22581808No hitNo description
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0008289Molecular Functionlipid binding
GO:0043565Molecular Functionsequence-specific DNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 816 aa     Download sequence    Send to blast
MSFGGYLDSD LHFNSSSGDT PGKGVMLSNG VFSQQLQQQQ RLADQTFTKS IFSSPALSLA  60
LQTGLEAQGE ALRIGDSCDG AVGVRRSREE EPESRSGSDN VDGGSGEDLD AADTNPSKKK  120
KRYHRHTPQQ IQELEALFKE CPHPDEKQRL HLSKRLSLET RQVKFWFQNR RTQMKTQIER  180
HENSLLRSDN DKLRVENMSL RDAMRNPVCM HCGGPAFIGE SSLEEQQLRL ENARLRDELE  240
RVCGLASKFL GQPVSAMGNA HVLQTGSNLE LCVGSNNCHG GPSASMPFGL DFAGEVFTSS  300
GVVVLNRSTI HNSNPSGMDK TLERSMLVEV ALAAMDELIK LAQSDEPLWI KSSDGGREIL  360
NREEYLRTFT PCMGMKPNGY VTEASRETGV VIINSLALVE TLMDTARWAE MFPCMIARAA  420
TIEVISSGMG GTRNGSLQLM QAELQVLSPL VPVREVTFLR FCKQHAEGVW AVVDVSIESV  480
HDTSGAPTYV KCRRLPSGCL LEDMPNGCSK VTWVEHAEYD ESEVHQLYRP LLSSGLGFGA  540
KRWVAMLQRQ SQCLAVLMSS AVPSGDNSAI TASGRKSMLK LAQRLTNNFC AGVCASSAHK  600
WNKLSSGDAG EEDIRVMTRK SINDPGEPPG VVLTAATSVW LPVPPQRIFD FLRNECLRSE  660
WDILSNGGPM QEMAHIAKGQ DPGNCVSLLR TSAMNPSQSS MLILQETCTD VAGSLVIYAP  720
VDIPAMHVVM NGGDSAYVAL LPSGFAILPD GSNPHTRTPS PNSKPSVEGS LLTVAFQILV  780
SSLPTARLTV ESVETVSNLI SCTVQKIKAA LNCKT*
Functional Description ? help Back to Top
Source Description
UniProtProbable transcription factor involved in the regulation of the tissue-specific accumulation of anthocyanins and in cellular organization of the primary root. {ECO:0000269|PubMed:10402424}.
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_007051913.20.0PREDICTED: homeobox-leucine zipper protein ANTHOCYANINLESS 2 isoform X2
SwissprotQ0WV120.0ANL2_ARATH; Homeobox-leucine zipper protein ANTHOCYANINLESS 2
TrEMBLA0A061DTK70.0A0A061DTK7_THECC; HD domain class transcription factor isoform 2
STRINGEMJ214550.0(Prunus persica)
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT4G00730.10.0HD-ZIP family protein
Publications ? help Back to Top
  1. Duarte JM, et al.
    Expression pattern shifts following duplication indicative of subfunctionalization and neofunctionalization in regulatory genes of Arabidopsis.
    Mol. Biol. Evol., 2006. 23(2): p. 469-78
    [PMID:16280546]