PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Kalax.0064s0104.1.p
Organism
Kalanchoe marnieriana
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; Saxifragales; Crassulaceae; Kalanchoe
Family MIKC_MADS
Protein Properties Length: 333aa    MW: 37185 Da    PI: 6.8509
Description MIKC_MADS family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Kalax.0064s0104.1.pgenomeJGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1SRF-TF84.46.9e-27958150
                         S---SHHHHHHHHHHHHHHHHHHHHHHHHHHT-EEEEEEE-TTSEEEEEE CS
               SRF-TF  1 krienksnrqvtfskRrngilKKAeELSvLCdaevaviifsstgklyeys 50
                         krien +nrqvtfskRrng++KKA+ELS+LCd+++a+i+fs++++l  +s
  Kalax.0064s0104.1.p  9 KRIENITNRQVTFSKRRNGLIKKAYELSILCDIDIALIMFSPSQRLSHFS 58
                         79********************************************9997 PP
2K-box15.19.6e-07117177969
                K-box   9 leeakaeslqqelakLkkeienLqreqRhllGedLesLslkeLqqLeqqLekslkkiRskK 69 
                            +++ e+lqqel+ L+ + +  q+++R +  + L+  s+ eL+  e++L + +++i  +K
  Kalax.0064s0104.1.p 117 SVNSNVEELQQELSSLQHQFQIAQEKLRIYEPNPLDFSSMAELEACEKNLMDIMSNISVRK 177
                          457789*********************************************9999999888 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS5006628.623161IPR002100Transcription factor, MADS-box
SMARTSM004324.9E-36160IPR002100Transcription factor, MADS-box
SuperFamilySSF554552.75E-28278IPR002100Transcription factor, MADS-box
CDDcd002652.30E-34275No hitNo description
PROSITE patternPS003500357IPR002100Transcription factor, MADS-box
PRINTSPR004041.2E-24323IPR002100Transcription factor, MADS-box
PfamPF003199.4E-251057IPR002100Transcription factor, MADS-box
PRINTSPR004041.2E-242338IPR002100Transcription factor, MADS-box
PRINTSPR004041.2E-243859IPR002100Transcription factor, MADS-box
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0003677Molecular FunctionDNA binding
GO:0046983Molecular Functionprotein dimerization activity
Sequence ? help Back to Top
Protein Sequence    Length: 333 aa     Download sequence    Send to blast
MGRVKLQIKR IENITNRQVT FSKRRNGLIK KAYELSILCD IDIALIMFSP SQRLSHFSGK  60
RRIEDVLTRY INLPDHDRGG DRIASKKCRI VLNNEYLITT LQTLRAVALQ LANQGRSVNS  120
NVEELQQELS SLQHQFQIAQ EKLRIYEPNP LDFSSMAELE ACEKNLMDIM SNISVRKLYL  180
DEQNGVPVSP TSFENKVISW MPGNGSNPNL IFVGSDPSTG SISIRNHSSS TIYDPMLQES  240
GITTDHESMN GCHITNSTYE QIPPWHQSYT SAELLSVFMP PTSFSQIKGM GGPSMQSMMT  300
SQQGEATSSC QHQQAPSAGE SLSATYDHHQ AQ*
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
1tqe_P9e-17170169Myocyte-specific enhancer factor 2B
1tqe_Q9e-17170169Myocyte-specific enhancer factor 2B
1tqe_R9e-17170169Myocyte-specific enhancer factor 2B
1tqe_S9e-17170169Myocyte-specific enhancer factor 2B
6c9l_A9e-17170169Myocyte-specific enhancer factor 2B
6c9l_B9e-17170169Myocyte-specific enhancer factor 2B
6c9l_C9e-17170169Myocyte-specific enhancer factor 2B
6c9l_D9e-17170169Myocyte-specific enhancer factor 2B
6c9l_E9e-17170169Myocyte-specific enhancer factor 2B
6c9l_F9e-17170169Myocyte-specific enhancer factor 2B
Search in ModeBase
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_010652831.11e-122PREDICTED: agamous-like MADS-box protein AGL104
TrEMBLD7SW171e-121D7SW17_VITVI; Uncharacterized protein
STRINGVIT_07s0031g01140.t011e-121(Vitis vinifera)
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT1G22130.16e-78AGAMOUS-like 104