PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Kalax.0064s0053.2.p
Organism
Kalanchoe marnieriana
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; Saxifragales; Crassulaceae; Kalanchoe
Family ARF
Protein Properties Length: 1093aa    MW: 120408 Da    PI: 6.3974
Description ARF family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Kalax.0064s0053.2.pgenomeJGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1B3711.6e-22139240199
                          EEEE-..-HHHHTT-EE--HHH.HTT.......---..--SEEEEEETTS-EEEEEE..EEETTEEEE-TTHHHHHHHHT--TT-EEEEE CS
                   B3   1 ffkvltpsdvlksgrlvlpkkfaeeh.......ggkkeesktltledesgrsWevkliyrkksgryvltkGWkeFvkangLkegDfvvFk 83 
                          f+k+lt sd++++g +++p++ ae++       + +++  ++++ +d++ ++W++++iyr++++r++lt+GW+ Fv+ ++L +gD+v+F 
  Kalax.0064s0053.2.p 139 FCKTLTASDTSTHGGFSVPRRAAENIfppldfsM-QPPA-QEIVAKDLHDNVWTFRHIYRGQPKRHLLTTGWSLFVSGKRLLTGDSVLFI 226
                          99*********************988*****954.4444.48************************************************ PP

                          E-SSSEE..EEEEE-S CS
                   B3  84 ldgrsefelvvkvfrk 99 
                            ++++++l+++ +r+
  Kalax.0064s0053.2.p 227 --RDEKQQLLLGTRRA 240
                          ..55788889999886 PP
2Auxin_resp116.62.1e-38265348183
           Auxin_resp   1 aahaastksvFevvYnPrastseFvvkvekvekalk.vkvsvGmRfkmafetedsserrlsGtvvgvsdldpvrWpnSkWrsLk 83 
                          aa+aa+++s+F+v+YnPr+s+seFv++++k+ ka++  ++s+GmRf+m fete+s +rr++Gt++g+sd+dpv+W+nS+Wr+L+
  Kalax.0064s0053.2.p 265 AANAAANNSIFTVFYNPRTSPSEFVIPLAKYYKAVNsYQISLGMRFRMTFETEESGTRRYMGTITGISDVDPVNWKNSQWRNLQ 348
                          799********************************989********************************************97 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
Gene3DG3DSA:2.40.330.101.1E-38130254IPR015300DNA-binding pseudobarrel domain
SuperFamilySSF1019363.27E-42130266IPR015300DNA-binding pseudobarrel domain
CDDcd100179.14E-20138230No hitNo description
PROSITE profilePS5086311.815139241IPR003340B3 DNA binding domain
PfamPF023621.1E-20139240IPR003340B3 DNA binding domain
SMARTSM010196.9E-22139241IPR003340B3 DNA binding domain
PfamPF065072.9E-34265348IPR010525Auxin response factor
PfamPF023092.1E-79771063IPR033389AUX/IAA domain
PROSITE profilePS5174528.1759781063IPR000270PB1 domain
SuperFamilySSF542773.01E-89901057No hitNo description
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0009725Biological Processresponse to hormone
GO:0005634Cellular Componentnucleus
GO:0003677Molecular FunctionDNA binding
GO:0005515Molecular Functionprotein binding
Sequence ? help Back to Top
Protein Sequence    Length: 1093 aa     Download sequence    Send to blast
MSATVAPASA AADAETPPAE AVVRRQDANK TINPELWQAC AGPLVNLPMA GTHVVYFPQG  60
HSEQVAVSMK KDVDAQYPNY SNLPPKLICL LHSVTLLANP DTDEVYAQMV LQPVSSIDQE  120
ALIGSDHSLK SHKPQTEFFC KTLTASDTST HGGFSVPRRA AENIFPPLDF SMQPPAQEIV  180
AKDLHDNVWT FRHIYRGQPK RHLLTTGWSL FVSGKRLLTG DSVLFIRDEK QQLLLGTRRA  240
NRLPPNVSSS VISSDSMHIG ILAAAANAAA NNSIFTVFYN PRTSPSEFVI PLAKYYKAVN  300
SYQISLGMRF RMTFETEESG TRRYMGTITG ISDVDPVNWK NSQWRNLQVG WDEANTGEKC  360
HRVSIWDIEP VTAPYFICPP PFIRFKRPRQ IGMPDEESSD MENLFKRVMP WLHDNAFLKE  420
SQPIPGINFT QWMNMQQNHL LTHSLQSAYM PSIPGCVLPS LAEADPSQHV GLSASHYPPQ  480
SNPQLGIQWP QQQLHQLPKP SPLNPCSTSH QHLPDLTQQS QNSVSQLPAS SHYMLPQTQV  540
KITDILQKQL ASQNAQAQGS IPQISNQQQL LSTSHNLGQL PEIVNQPVTN NLIQLPMLQR  600
GHQQEQQYLH SQQSITQHVG QIASFQGQQR PTADVANNIY IPASIGSVQA VEMPQAMTSS  660
TYPCTMDPTQ QQCGNNTGLS TGCISSSPQQ LRSVHQPLAV NISELPFPTG CHTSNVNQVS  720
VDGTTIWTGA GQLLCANGVP SCSTSTLNEK FPNAIKSVKG MIQKSYIQGP EDMTPPAFIL  780
PETGAIESAS SSNSFVRCSE NKSAVLTELC NGKKQNAGVA NNFMIVNSVQ PQKNYLDTSY  840
SSTSVSQFEN NASLQQNVNP ASFSFQPMMS QTAVGFVDHR NNISFEMSSG QNITSLNQDP  900
LLSQDVVSLG KNKSASEDML HDFEYAKDPQ QELSSSIVSQ SFGVPDMTFN SIESTLSDNS  960
FIAKPPFAPP PQPYQRLRTY TKVYKRGAVG RSIDITAYSG YDDLKQDLAR RFGIEGQLED  1020
RHKVRWKLVY VDHENDVLLV GDDPWEEFVS CVRSIKILSP QEVQQMSLDG DVSNSVLLKQ  1080
ACSSSNGGIP SE*
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
4ldu_A1e-1543136950388Auxin response factor 5
Search in ModeBase
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_023876353.10.0auxin response factor 19-like
TrEMBLA0A2N9GCT50.0A0A2N9GCT5_FAGSY; Auxin response factor
TrEMBLA0A2N9HN130.0A0A2N9HN13_FAGSY; Auxin response factor
STRINGXP_010106948.10.0(Morus notabilis)
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT5G20730.20.0ARF family protein