PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Kalax.0063s0007.1.p
Organism
Kalanchoe marnieriana
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; Saxifragales; Crassulaceae; Kalanchoe
Family AP2
Protein Properties Length: 558aa    MW: 61176.9 Da    PI: 4.8767
Description AP2 family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Kalax.0063s0007.1.pgenomeJGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1AP2301.3e-09320378155
                  AP2   1 sgykGVrwdkkrgrWvAeIrdpse...ngkr..krfslgkfgtaeeAakaaiaarkkleg 55 
                          s+++GV+ ++++ r++A+++d s    +g +  kr + g ++ +e+Aa+a++ a++k++g
  Kalax.0063s0007.1.p 320 SRFRGVTMHRWSSRYEAHLWDKSYartDG-QpgKRGRQGGYDKEEKAARAYDLAALKFWG 378
                          789******************66665544.4468888899****************9987 PP
2AP230.78.1e-10410455755
                  AP2   7 rwdkkrgrWvAeIrdpsengkr..krfslgkfgtaeeAakaaiaarkkleg 55 
                          r+  +rg W A+I  +     +  +  +lg+f+t+eeAa+a++ a+ k++g
  Kalax.0063s0007.1.p 410 RRSNSRGHWQARIARV-----TdeRDLYLGSFDTEEEAAEAYDIAAIKFRG 455
                          67788999****9986.....345*************************98 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PfamPF008474.1E-6320378IPR001471AP2/ERF domain
SuperFamilySSF541719.15E-14320388IPR016177DNA-binding domain
CDDcd000189.17E-19320388No hitNo description
Gene3DG3DSA:3.30.730.101.6E-10321387IPR001471AP2/ERF domain
PROSITE profilePS5103216.792321386IPR001471AP2/ERF domain
SMARTSM003801.2E-19321392IPR001471AP2/ERF domain
PRINTSPR003674.3E-5322333IPR001471AP2/ERF domain
PRINTSPR003674.3E-5368388IPR001471AP2/ERF domain
PROSITE profilePS5103214.948402463IPR001471AP2/ERF domain
PfamPF008472.4E-4409455IPR001471AP2/ERF domain
SMARTSM003803.8E-16411469IPR001471AP2/ERF domain
Gene3DG3DSA:3.30.730.102.4E-13412464IPR001471AP2/ERF domain
SuperFamilySSF541714.51E-13413464IPR016177DNA-binding domain
CDDcd000185.16E-16416465No hitNo description
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0003677Molecular FunctionDNA binding
GO:0003700Molecular Functiontranscription factor activity, sequence-specific DNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 558 aa     Download sequence    Send to blast
MTDKTYKCAA LTADSRIRTR ELNPSQVRCS PTELPLIPWY LFNSNNNDNS GLENELAHAA  60
GMHVVQPSPS PSTGSVTGSN SGFSPENGAD EFVQFLLNNN LVDTNNESGA SFGLYDEPGS  120
MAGPSHQFFQ NNNLASNGLV AWGDSSSLFN PETAGAGFGF NVDSGSYMTL PNHFLPNNNL  180
IGNYNNNNNN AGLVTGFEYF CSIPETGADY GFDFDSGYAA GPSDQFLQNN NLVSNINNNR  240
SGDYSFLNPG DDGDGYFELG SMAGPSEFLH NNNVYAGNID CNGGSQTTGW EQQLVSAAAY  300
DKNGSFENLV GVNRLNKKTS RFRGVTMHRW SSRYEAHLWD KSYARTDGQP GKRGRQGGYD  360
KEEKAARAYD LAALKFWGLM AATNFPVSDY IKELNVMHHM SRQQLITSLR RSNSRGHWQA  420
RIARVTDERD LYLGSFDTEE EAAEAYDIAA IKFRGPFVVT NFELSRYDLR AVAENPIPVG  480
REAKRMRIMQ GSEGRGNTTG ISGSIYLNSS ASQPTPSEPP AIYQKNNLVP NFTPCQPITS  540
FSTTQHDPQN LPNEEQC*
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT5G17430.12e-59AP2 family protein