PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Kalax.0062s0002.1.p
Organism
Kalanchoe marnieriana
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; Saxifragales; Crassulaceae; Kalanchoe
Family G2-like
Protein Properties Length: 505aa    MW: 55770.7 Da    PI: 6.7777
Description G2-like family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Kalax.0062s0002.1.pgenomeJGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1G2-like102.52.6e-32107160255
              G2-like   2 prlrWtpeLHerFveaveqLGGsekAtPktilelmkvkgLtlehvkSHLQkYRl 55 
                          prlrWtp+LH +Fv+ave+LGG+e+AtPk +l+lm+vkgL+++hvkSHLQ+YR+
  Kalax.0062s0002.1.p 107 PRLRWTPDLHMCFVHAVERLGGQERATPKLVLQLMNVKGLSIAHVKSHLQMYRS 160
                          8****************************************************7 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
Gene3DG3DSA:1.10.10.607.1E-31103161IPR009057Homeodomain-like
PROSITE profilePS5129412.001103163IPR017930Myb domain
SuperFamilySSF466891.65E-14105161IPR009057Homeodomain-like
TIGRFAMsTIGR015577.3E-23107162IPR006447Myb domain, plants
PfamPF002491.5E-8108159IPR001005SANT/Myb domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0003677Molecular FunctionDNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 505 aa     Download sequence    Send to blast
MASSAETPTF VAIEIISDDE NLSGRSSSQQ SAKAEHHPTL RKSSSVLDLN ERAKGDVEEE  60
NQIGDCDDQF DEEGNSTSSN NDDDREDEKK RNNGTNTVRQ YVRSKMPRLR WTPDLHMCFV  120
HAVERLGGQE RATPKLVLQL MNVKGLSIAH VKSHLQMYRS KKLDESGQVL SHHQNGPAGH  180
GKHHHQMTDM TYQQRGLHTS SHHPYAYPHF KIDHSNRSGG SSSINHVTFP LFKPSLNSPR  240
NQSWPMTGHP MARWSKDLGL APGYPPSHEP RSASPKHFGP IRQSHFLERR WPASGVGLGS  300
EDRQRCRNAS TSHNAAYDWD KSHHPGYHLN LGNVLSLGNS QIASTSTMLT TTTTLASKEV  360
SNSSPTLSMS TSSDRELGAP FHLKLLQRLE EERISSMEDM MVADVEKHEE KLDGEVERIR  420
SCQPNLQLSL SHTDETGKKP SGDGGLGSSS VDTALSLSIS LSAPAAVGVE EELTVEKCEG  480
GDIGEEIRRW GSCEMVRSKA TIWG*
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
6j4k_A4e-17108162458Protein PHOSPHATE STARVATION RESPONSE 1
6j4k_B4e-17108162458Protein PHOSPHATE STARVATION RESPONSE 1
6j4r_A3e-17108162357Protein PHOSPHATE STARVATION RESPONSE 1
6j4r_B3e-17108162357Protein PHOSPHATE STARVATION RESPONSE 1
6j4r_C3e-17108162357Protein PHOSPHATE STARVATION RESPONSE 1
6j4r_D3e-17108162357Protein PHOSPHATE STARVATION RESPONSE 1
6j5b_A4e-17108162458Protein PHOSPHATE STARVATION RESPONSE 1
6j5b_C4e-17108162458Protein PHOSPHATE STARVATION RESPONSE 1
6j5b_D4e-17108162458Protein PHOSPHATE STARVATION RESPONSE 1
6j5b_F4e-17108162458Protein PHOSPHATE STARVATION RESPONSE 1
6j5b_H4e-17108162458Protein PHOSPHATE STARVATION RESPONSE 1
6j5b_J4e-17108162458Protein PHOSPHATE STARVATION RESPONSE 1
Binding Motif ? help Back to Top
Motif ID Method Source Motif file
MP00297DAPTransfer from AT2G38300Download
Motif logo
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieveRetrieve
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT2G38300.14e-37G2-like family protein