PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

Kalax.0061s0140.1.p

Organism

Kalanchoe marnieriana

Taxonomic ID

80907

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; Saxifragales; Crassulaceae; Kalanchoe

Family

HB-other

Protein Properties

Length: 1185aa MW: 130880 Da PI: 6.9692

Description

HB-other family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
Kalax.0061s0140.1.p	genome	JGI	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	Homeobox	18.9	2.6e-06	66	121	1	56
TT--SS--HHHHHHHHHHHHHSSS--HHHHHHHHHHCTS-HHHHHHHHHHHHHHHH CS Homeobox 1 rrkRttftkeqleeLeelFeknrypsaeereeLAkklgLterqVkvWFqNrRakek 56 +++R ++++ + ++++F + ++s++e +e+++k g+t +qV+ +F +R++ + Kalax.0061s0140.1.p 66 KKPRDLLNPKAVAYMQSVFSIKDKISKKETREISAKFGITLAQVRDFFACQRTRVR 121 79999********************************************9999977 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
PROSITE profile	PS50071	9.167	63	123	IPR001356	Homeobox domain
SMART	SM00389	0.0034	65	127	IPR001356	Homeobox domain
SuperFamily	SSF46689	2.35E-5	65	124	IPR009057	Homeodomain-like
CDD	cd00086	0.00112	66	122	No hit	No description
Gene3D	G3DSA:1.10.10.60	1.3E-5	66	131	IPR009057	Homeodomain-like

Gene Ontology ? help Back to Top
GO Term	GO Category	GO Description
GO:0003677	Molecular Function	DNA binding

Sequence ? help Back to Top
Protein Sequence Length: 1185 aa Download sequence Send to blast
MDGLSARLAA EEEGIGTSME SFQKSLESQK DLVEMQRIVS TQCEFTGVNP LSQEMAAGAL 60 SIPIGKKPRD LLNPKAVAYM QSVFSIKDKI SKKETREISA KFGITLAQVR DFFACQRTRV 120 REIVQSTQEM SRDRRKVLKE LQDGNQENED SIMLSDLSPV VNTGPVTCDT NMSNAVDPEI 180 NGTTLRSDSR PTETDVVTAR ADSPEFSLAT CIPITNEEDI PEPSRTETAP HETAGPTYAE 240 PVPLNVFPPT RSESLVLNSA GISDAGMQPK YIPVEVIPGL DGSEKNFIEN IFNLMLTEET 300 FSGKVKLMEG ILKVENPSVL NWFLTRGGMM ILATWLGQAA VEEQTSVLYV ILKVLCHLPL 360 AKASTEQMSV ILQSVNSLRF YRTQGTSNKA RICLARWSKL FAKNQPMRKR DGVKSQVEVA 420 KHKLLTQSIN EIIGDESRQS ELENTDGNLT SSNKAIENLR KRDRPLQMEM LTASSDESMK 480 RSSMGLPASQ GRGRRKVQLV EHPGQKLTGR SQQAARASVS QSRPVSTDDI KKAKLRKEFM 540 EAKYGKKKSE HENLKLGMNQ SGAIVSASRV PTQPVPHERR NSRLPLPKTV TEHEPPVVLY 600 PYRTDVKKKD LLPLQSADEL KQPLVPLQNS TVEFEPTALH LSGNTDEQPM MPMAKSIAEQ 660 MQSMVPILNK YDDSAPPQFN SNGTAEQRQP VVPIANSMVQ QAPRQKKTIP ESKEPFWKQC 720 KRVQVQWKTP PEMVIDKEWR VGSGQNSREV SVYQRPEEIP PNPKNPWENE IDYDDSLTPI 780 IPIEPVLDTT DTLQSHNSIS LETGNASQMV SVAPTPAPNS LPATISGSAH DPVLLDALLK 840 NPALVFTLTS GQPNSMPSED TVRLLDMIKA NAGALPAANI TPNLPSPTPS SNFGTTGWQP 900 EVARNHLARH SPTPNSGASA YPGVGATAYD RHPPATDLAQ MHLPSTHNYP QLQSPTPQFQ 960 PPQTYGVHYD NNFTNSGLHS PTPHAETISS VKPYHHPVSL ETTSMGETRS SAGYNPLRSY 1020 SSQPPAQPHQ PPLYDHLSQV AYHSSGPVQP QQQPVYEHHQ GHFQNQTYPT SGHYGNPSSF 1080 SDSWRSRGLA ADSYAQVNSS NHYGSTHWYK NENVTSLNQF ESWSPPHSGP SMSVDHVSGS 1140 SQPRTGYGSN YMPDQSRSMN YPSGYVSGAN QNGNGWWSNH DWRR*

Sequence ? help Back to Top

Protein Sequence Length: 1185 aa Download sequence Send to blast

MDGLSARLAA EEEGIGTSME SFQKSLESQK DLVEMQRIVS TQCEFTGVNP LSQEMAAGAL  60
SIPIGKKPRD LLNPKAVAYM QSVFSIKDKI SKKETREISA KFGITLAQVR DFFACQRTRV  120
REIVQSTQEM SRDRRKVLKE LQDGNQENED SIMLSDLSPV VNTGPVTCDT NMSNAVDPEI  180
NGTTLRSDSR PTETDVVTAR ADSPEFSLAT CIPITNEEDI PEPSRTETAP HETAGPTYAE  240
PVPLNVFPPT RSESLVLNSA GISDAGMQPK YIPVEVIPGL DGSEKNFIEN IFNLMLTEET  300
FSGKVKLMEG ILKVENPSVL NWFLTRGGMM ILATWLGQAA VEEQTSVLYV ILKVLCHLPL  360
AKASTEQMSV ILQSVNSLRF YRTQGTSNKA RICLARWSKL FAKNQPMRKR DGVKSQVEVA  420
KHKLLTQSIN EIIGDESRQS ELENTDGNLT SSNKAIENLR KRDRPLQMEM LTASSDESMK  480
RSSMGLPASQ GRGRRKVQLV EHPGQKLTGR SQQAARASVS QSRPVSTDDI KKAKLRKEFM  540
EAKYGKKKSE HENLKLGMNQ SGAIVSASRV PTQPVPHERR NSRLPLPKTV TEHEPPVVLY  600
PYRTDVKKKD LLPLQSADEL KQPLVPLQNS TVEFEPTALH LSGNTDEQPM MPMAKSIAEQ  660
MQSMVPILNK YDDSAPPQFN SNGTAEQRQP VVPIANSMVQ QAPRQKKTIP ESKEPFWKQC  720
KRVQVQWKTP PEMVIDKEWR VGSGQNSREV SVYQRPEEIP PNPKNPWENE IDYDDSLTPI  780
IPIEPVLDTT DTLQSHNSIS LETGNASQMV SVAPTPAPNS LPATISGSAH DPVLLDALLK  840
NPALVFTLTS GQPNSMPSED TVRLLDMIKA NAGALPAANI TPNLPSPTPS SNFGTTGWQP  900
EVARNHLARH SPTPNSGASA YPGVGATAYD RHPPATDLAQ MHLPSTHNYP QLQSPTPQFQ  960
PPQTYGVHYD NNFTNSGLHS PTPHAETISS VKPYHHPVSL ETTSMGETRS SAGYNPLRSY  1020
SSQPPAQPHQ PPLYDHLSQV AYHSSGPVQP QQQPVYEHHQ GHFQNQTYPT SGHYGNPSSF  1080
SDSWRSRGLA ADSYAQVNSS NHYGSTHWYK NENVTSLNQF ESWSPPHSGP SMSVDHVSGS  1140
SQPRTGYGSN YMPDQSRSMN YPSGYVSGAN QNGNGWWSNH DWRR*

Regulation -- PlantRegMap ? help Back to Top
Source	Upstream Regulator	Target Gene
PlantRegMap	Retrieve	-

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT4G02560.2	8e-73	HB-other family protein

Link Out ? help Back to Top
Phytozome	Kalax.0061s0140.1.p