PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Home TFext BLAST Prediction Download Help About Links PlantRegMap |
Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | Kalax.0061s0096.1.p | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; Saxifragales; Crassulaceae; Kalanchoe
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Family | ERF | ||||||||
Protein Properties | Length: 282aa MW: 30716.1 Da PI: 9.8355 | ||||||||
Description | ERF family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | AP2 | 64.4 | 2.3e-20 | 34 | 84 | 2 | 56 |
AP2 2 gykGVrwdkkrgrWvAeIrdpsengkrkrfslgkfgtaeeAakaaiaarkklege 56 ++ GVr+++ +grWvAeI+d + +r r +lg+++t+eeAa+a+++a+++l+ge Kalax.0061s0096.1.p 34 RFVGVRQRP-SGRWVAEIKDSC---QRVRLWLGTYDTPEEAARAYDEAARALRGE 84 589******.7*********42...35**************************97 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
PROSITE profile | PS51032 | 20.336 | 34 | 91 | IPR001471 | AP2/ERF domain |
CDD | cd00018 | 9.78E-31 | 34 | 93 | No hit | No description |
Gene3D | G3DSA:3.30.730.10 | 6.9E-28 | 34 | 92 | IPR001471 | AP2/ERF domain |
SMART | SM00380 | 5.4E-34 | 34 | 97 | IPR001471 | AP2/ERF domain |
Pfam | PF00847 | 3.3E-15 | 34 | 84 | IPR001471 | AP2/ERF domain |
SuperFamily | SSF54171 | 5.49E-20 | 35 | 93 | IPR016177 | DNA-binding domain |
PRINTS | PR00367 | 2.7E-7 | 35 | 46 | IPR001471 | AP2/ERF domain |
PRINTS | PR00367 | 2.7E-7 | 57 | 73 | IPR001471 | AP2/ERF domain |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0006355 | Biological Process | regulation of transcription, DNA-templated | ||||
GO:0003677 | Molecular Function | DNA binding | ||||
GO:0003700 | Molecular Function | transcription factor activity, sequence-specific DNA binding |
Sequence ? help Back to Top |
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Protein Sequence Length: 282 aa Download sequence Send to blast |
MASCDSTKSR LTGAGGGGGR QQMAMGKAAV AGRRFVGVRQ RPSGRWVAEI KDSCQRVRLW 60 LGTYDTPEEA ARAYDEAARA LRGENARTNY PYSKRPCGSS VNSFGNGDGN HELSCSSLKA 120 KLSKSLQSVM GRSSESSKSS KNRVSDPLTF ASVFHLRGNG GPHEYRHMND TIDKAVQPSI 180 VVPSHEVNQS SSWDSSSLSD SSPDRVTVQS DTVGSDLTEK FFNMERLTCP NQTMNWGSML 240 LDNWQGEFTG NTDSSRRKKF KVSSSVMVPP TFSSFPFNDV K* |
3D Structure ? help Back to Top | ||||||
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PDB ID | Evalue | Query Start | Query End | Hit Start | Hit End | Description |
5wx9_A | 2e-14 | 34 | 93 | 14 | 74 | Ethylene-responsive transcription factor ERF096 |
Search in ModeBase |
Regulation -- PlantRegMap ? help Back to Top | ||||||
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Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | - |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_021622987.1 | 2e-75 | ethylene-responsive transcription factor RAP2-11-like | ||||
TrEMBL | A0A2G9HFD5 | 1e-79 | A0A2G9HFD5_9LAMI; Uncharacterized protein | ||||
STRING | XP_008391661.1 | 8e-71 | (Malus domestica) |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT5G19790.1 | 5e-15 | related to AP2 11 |
Link Out ? help Back to Top | |
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Phytozome | Kalax.0061s0096.1.p |