![]() |
PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
|
Home TFext BLAST Prediction Download Help About Links PlantRegMap |
Transcription Factor Information
Basic Information? help Back to Top | |||||||||
---|---|---|---|---|---|---|---|---|---|
TF ID | Kalax.0060s0118.1.p | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; Saxifragales; Crassulaceae; Kalanchoe
|
||||||||
Family | GATA | ||||||||
Protein Properties | Length: 162aa MW: 17068.2 Da PI: 10.3104 | ||||||||
Description | GATA family protein | ||||||||
Gene Model |
|
Signature Domain? help Back to Top | |||||||
---|---|---|---|---|---|---|---|
No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | GATA | 57.7 | 1.5e-18 | 46 | 80 | 1 | 35 |
GATA 1 CsnCgttkTplWRrgpdgnktLCnaCGlyyrkkgl 35 Cs Cgt+kTplWR gp g+k+LCnaCG++ rk+++ Kalax.0060s0118.1.p 46 CSDCGTSKTPLWRGGPAGPKSLCNACGIRSRKRRR 80 ********************************986 PP |
Protein Features ? help Back to Top | ||||||
---|---|---|---|---|---|---|
Database | Entry ID | E-value | Start | End | InterPro ID | Description |
SMART | SM00401 | 2.1E-13 | 40 | 101 | IPR000679 | Zinc finger, GATA-type |
PROSITE profile | PS50114 | 12.176 | 40 | 76 | IPR000679 | Zinc finger, GATA-type |
SuperFamily | SSF57716 | 9.03E-13 | 41 | 79 | No hit | No description |
Gene3D | G3DSA:3.30.50.10 | 3.7E-15 | 44 | 79 | IPR013088 | Zinc finger, NHR/GATA-type |
CDD | cd00202 | 1.65E-13 | 45 | 92 | No hit | No description |
PROSITE pattern | PS00344 | 0 | 46 | 71 | IPR000679 | Zinc finger, GATA-type |
Pfam | PF00320 | 2.1E-16 | 46 | 80 | IPR000679 | Zinc finger, GATA-type |
Gene Ontology ? help Back to Top | ||||||
---|---|---|---|---|---|---|
GO Term | GO Category | GO Description | ||||
GO:0006355 | Biological Process | regulation of transcription, DNA-templated | ||||
GO:0003700 | Molecular Function | transcription factor activity, sequence-specific DNA binding | ||||
GO:0008270 | Molecular Function | zinc ion binding | ||||
GO:0043565 | Molecular Function | sequence-specific DNA binding |
Sequence ? help Back to Top |
---|
Protein Sequence Length: 162 aa Download sequence Send to blast |
MFDQMEKGSE KVELKSNNGS TITAAAVGSD VSYSSGSEGQ AIKKTCSDCG TSKTPLWRGG 60 PAGPKSLCNA CGIRSRKRRR ALLGLSKPEE KRSKKSASSS SNNGSISSES GGDGEKKLTS 120 HLKLTGLTWQ RSTADKYRRK LGEEEQAAVL LMAMAYSSVL A* |
Nucleic Localization Signal ? help Back to Top | |||
---|---|---|---|
No. | Start | End | Sequence |
1 | 75 | 79 | RKRRR |
Functional Description ? help Back to Top | ||||||
---|---|---|---|---|---|---|
Source | Description | |||||
UniProt | Transcriptional regulator that specifically binds 5'-GATA-3' or 5'-GAT-3' motifs within gene promoters. {ECO:0000250}. |
Regulation -- PlantRegMap ? help Back to Top | ||||||
---|---|---|---|---|---|---|
Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | - |
Annotation -- Protein ? help Back to Top | |||||||
---|---|---|---|---|---|---|---|
Source | Hit ID | E-value | Description | ||||
Refseq | XP_021291147.1 | 4e-46 | GATA transcription factor 15-like | ||||
Swissprot | Q9FJ10 | 2e-34 | GAT16_ARATH; GATA transcription factor 16 | ||||
TrEMBL | A0A2R6PWZ7 | 3e-41 | A0A2R6PWZ7_ACTCH; GATA transcription factor | ||||
STRING | EOY06643 | 2e-41 | (Theobroma cacao) |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
---|---|---|---|---|---|---|
Hit ID | E-value | Description | ||||
AT5G49300.1 | 1e-31 | GATA transcription factor 16 |
Link Out ? help Back to Top | |
---|---|
Phytozome | Kalax.0060s0118.1.p |
Publications ? help Back to Top | |||
---|---|---|---|
|