PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Kalax.0060s0090.1.p
Organism
Kalanchoe marnieriana
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; Saxifragales; Crassulaceae; Kalanchoe
Family MYB
Protein Properties Length: 376aa    MW: 42130.7 Da    PI: 6.8996
Description MYB family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Kalax.0060s0090.1.pgenomeJGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1Myb_DNA-binding57.72.6e-1865112148
                          TSSS-HHHHHHHHHHHHHTTTT-HHHHHHHHTTTS-HHHHHHHHHHHT CS
      Myb_DNA-binding   1 rgrWTteEdellvdavkqlGggtWktIartmgkgRtlkqcksrwqkyl 48 
                          rg+WT eEd  l  +++++G g+W++ ar+ g++Rt+k+c++rw++yl
  Kalax.0060s0090.1.p  65 RGPWTVEEDHTLMSYIAKHGEGRWNSLARCAGLKRTGKSCRLRWLNYL 112
                          89********************************************97 PP
2Myb_DNA-binding513.4e-16118161146
                          TSSS-HHHHHHHHHHHHHTTTT-HHHHHHHHTTTS-HHHHHHHHHH CS
      Myb_DNA-binding   1 rgrWTteEdellvdavkqlGggtWktIartmgkgRtlkqcksrwqk 46 
                          rg+ T eE++l+++++ ++G++ W++Ia++++ gRt++++k++w++
  Kalax.0060s0090.1.p 118 RGNITLEEQLLILELHSRWGNR-WSKIAQHLP-GRTDNEIKNYWRT 161
                          7999******************.*********.***********96 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS5129424.38860116IPR017930Myb domain
SuperFamilySSF466893.07E-3162159IPR009057Homeodomain-like
SMARTSM007176.9E-1464114IPR001005SANT/Myb domain
PfamPF002498.4E-1765112IPR001005SANT/Myb domain
Gene3DG3DSA:1.10.10.601.6E-2366119IPR009057Homeodomain-like
CDDcd001672.32E-1167112No hitNo description
PROSITE profilePS5129418.707117167IPR017930Myb domain
SMARTSM007171.3E-14117165IPR001005SANT/Myb domain
PfamPF002496.8E-15118161IPR001005SANT/Myb domain
Gene3DG3DSA:1.10.10.609.9E-23120166IPR009057Homeodomain-like
CDDcd001671.01E-7138161No hitNo description
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0003677Molecular FunctionDNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 376 aa     Download sequence    Send to blast
MEGYMNGRSA VAEKQQQYYS NMSSLVGGGV GAMSSNSSHN HHKVQSSSSG EEEEDEMGMM  60
MDLRRGPWTV EEDHTLMSYI AKHGEGRWNS LARCAGLKRT GKSCRLRWLN YLRPDVRRGN  120
ITLEEQLLIL ELHSRWGNRW SKIAQHLPGR TDNEIKNYWR TRVQKHAKQL KCDVNSKQFK  180
DTMRYLWMPR LVERIQAAAA ANGASSPRIP LNHSLPNLTA PIHHHHHNLI IPPTTAPSHH  240
FTSSSYVCSD NSGATAASSD SFGAQVSPAS DMAEDYQMPG SCYNLDNNVD YFTGSNNGGQ  300
ICYSDSLISP AGYYHPQAAD FPSMEQHSSN NQNSSGLISN NLNQWLVEGG DLSDNMWNVE  360
DIWLLQQLQL NNNNY*
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
1a5j_A1e-25621654106B-MYB
Search in ModeBase
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_011027944.11e-125PREDICTED: transcription factor MYB108-like
TrEMBLB9HIK11e-123B9HIK1_POPTR; Uncharacterized protein
STRINGPOPTR_0008s10080.11e-123(Populus trichocarpa)
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT5G49620.16e-82myb domain protein 78