PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
Home  TFext  BLAST  Prediction  Download  Help  About  Links  PlantRegMap
(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Kalax.0059s0043.1.p
Organism
Kalanchoe marnieriana
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; Saxifragales; Crassulaceae; Kalanchoe
Family MIKC_MADS
Protein Properties Length: 212aa    MW: 24584.2 Da    PI: 8.6507
Description MIKC_MADS family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Kalax.0059s0043.1.pgenomeJGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1SRF-TF84.75.4e-27959151
                         S---SHHHHHHHHHHHHHHHHHHHHHHHHHHT-EEEEEEE-TTSEEEEEE- CS
               SRF-TF  1 krienksnrqvtfskRrngilKKAeELSvLCdaevaviifsstgklyeyss 51
                         krien +nr vtfskRr+gi KKA+E+ vLCda+v++iif+s+gk++ey+s
  Kalax.0059s0043.1.p  9 KRIENATNRMVTFSKRRTGITKKAKEITVLCDAKVSLIIFASNGKMHEYCS 59
                         79***********************************************96 PP
2K-box74.33.3e-2571167197
                K-box   1 yqkssgksleeakaeslqqelakLkkeienLqreqRhllGedLesLslkeLqqLeqqLekslkkiRskKnellleqieelqkkekelqee 90 
                          yq++sgk+l++ak+e+l++e++++kke++n+q e+Rhl Ged++ L++ +L+++e+ Le +l+++R+k +e+++++ +++++ e+e++e 
  Kalax.0059s0043.1.p  71 YQNQSGKRLWDAKHENLSNEIDRVKKENDNMQIELRHLRGEDIGALDIPQLMEMEETLEIGLTNVREKMMEIYKMKKRNTKMLEEEISEL 160
                          899*************************************************************************************99 PP

                K-box  91 nkaLrkk 97 
                            + +++
  Kalax.0059s0043.1.p 161 SYSVHQQ 167
                          9888876 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS5006631.076161IPR002100Transcription factor, MADS-box
SMARTSM004321.8E-36160IPR002100Transcription factor, MADS-box
CDDcd002653.18E-37280No hitNo description
SuperFamilySSF554551.96E-34296IPR002100Transcription factor, MADS-box
PROSITE patternPS003500357IPR002100Transcription factor, MADS-box
PRINTSPR004042.9E-27323IPR002100Transcription factor, MADS-box
PfamPF003196.4E-221057IPR002100Transcription factor, MADS-box
PRINTSPR004042.9E-272338IPR002100Transcription factor, MADS-box
PRINTSPR004042.9E-273859IPR002100Transcription factor, MADS-box
PfamPF014862.6E-1582162IPR002487Transcription factor, K-box
PROSITE profilePS5129713.21584170IPR002487Transcription factor, K-box
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0010093Biological Processspecification of floral organ identity
GO:0005634Cellular Componentnucleus
GO:0005737Cellular Componentcytoplasm
GO:0003677Molecular FunctionDNA binding
GO:0003700Molecular Functiontranscription factor activity, sequence-specific DNA binding
GO:0046983Molecular Functionprotein dimerization activity
Sequence ? help Back to Top
Protein Sequence    Length: 212 aa     Download sequence    Send to blast
MGRGKIEIKR IENATNRMVT FSKRRTGITK KAKEITVLCD AKVSLIIFAS NGKMHEYCSH  60
NTSLSDILDI YQNQSGKRLW DAKHENLSNE IDRVKKENDN MQIELRHLRG EDIGALDIPQ  120
LMEMEETLEI GLTNVREKMM EIYKMKKRNT KMLEEEISEL SYSVHQQEIS MGVKARDVVD  180
DGYSQRVRGY NAQMPFTFRV QPIQPNLQDR M*
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
6bz1_A2e-15191183MEF2 CHIMERA
6bz1_B2e-15191183MEF2 CHIMERA
6bz1_C2e-15191183MEF2 CHIMERA
6bz1_D2e-15191183MEF2 CHIMERA
Search in ModeBase
Functional Description ? help Back to Top
Source Description
UniProtProbable transcription factor that may play role in specifying stamen and petal organ identity. {ECO:0000269|PubMed:23181568, ECO:0000269|Ref.1, ECO:0000305|PubMed:17920788}.
Binding Motif ? help Back to Top
Motif ID Method Source Motif file
MP00080ChIP-seqTransfer from AT5G20240Download
Motif logo
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieveRetrieve
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_022154226.11e-104floral homeotic protein PMADS 2
SwissprotQ0HA251e-103MADS9_VITVI; Agamous-like MADS-box protein MADS9
TrEMBLA0A2R6RPG71e-102A0A2R6RPG7_ACTCH; Floral homeotic protein like
TrEMBLQ9ZTQ91e-102Q9ZTQ9_CUCSA; MADS box protein 26
STRINGcassava4.1_022750m1e-103(Manihot esculenta)
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT5G20240.11e-87MIKC_MADS family protein
Publications ? help Back to Top
  1. Jaillon O, et al.
    The grapevine genome sequence suggests ancestral hexaploidization in major angiosperm phyla.
    Nature, 2007. 449(7161): p. 463-7
    [PMID:17721507]
  2. Díaz-Riquelme J,Lijavetzky D,Martínez-Zapater JM,Carmona MJ
    Genome-wide analysis of MIKCC-type MADS box genes in grapevine.
    Plant Physiol., 2009. 149(1): p. 354-69
    [PMID:18997115]
  3. Grimplet J,Martínez-Zapater JM,Carmona MJ
    Structural and functional annotation of the MADS-box transcription factor family in grapevine.
    BMC Genomics, 2016. 17: p. 80
    [PMID:26818751]