PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Kalax.0059s0024.1.p
Organism
Kalanchoe marnieriana
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; Saxifragales; Crassulaceae; Kalanchoe
Family GRAS
Protein Properties Length: 546aa    MW: 61187.4 Da    PI: 4.8989
Description GRAS family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Kalax.0059s0024.1.pgenomeJGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1GRAS446.22.1e-1361765452374
                 GRAS   2 velLlecAeavssgdlelaqalLarlselaspdgdpmqRlaayfteALaarlarsvselykalppsetseknsseelaalklfsevsPil 91 
                          ++lL++cA  +++g+l++a+a++++l++l+s +gdp +R+aay++e+Laar+a+s++ lykal+++e +   ++++laa+++++ev+P++
  Kalax.0059s0024.1.p 176 KQLLIHCASIIAEGKLREASAMINELRQLVSIQGDPHERIAAYMVEGLAARMAESGQCLYKALKCKEPP---TTDRLAAMQILFEVCPCF 262
                          589*****************************************************************9...9***************** PP

                 GRAS  92 kfshltaNqaIleavegeervHiiDfdisqGlQWpaLlqaLasRpegppslRiTgvgspesg..skeeleetgerLakfAeelgvpfefn 179
                          kf++++aN  I+ea+  e+rvHiiDfdi+qG Q+++L+q+LasR++  p+lR+Tgv++pes+  s   l+ +g rL+++Ae+l++pfef+
  Kalax.0059s0024.1.p 263 KFGYMAANGVIMEAIRDEKRVHIIDFDINQGNQYITLIQTLASRKGRRPHLRLTGVDDPESVqrSVGGLKIIGLRLEQLAEALELPFEFH 352
                          ************************************************************9989999*********************** PP

                 GRAS 180 vlvakrledleleeLrvkpgEalaVnlvlqlhrlldesvsleserdevLklvkslsPkvvvvveqeadhnsesFlerflealeyysalfd 269
                          + va++++d+++++L+ +p+E+l+Vn+++qlh+++desvs+ ++rd++L+ +k+l Pk+v+vveq++++n+++F+ rf+ea +yysa+f+
  Kalax.0059s0024.1.p 353 A-VASATSDVTPDMLDHRPDEVLIVNFAFQLHHMPDESVSTVNQRDQLLRKIKGLHPKLVTVVEQDVNTNTSPFFPRFIEAYNYYSAVFE 441
                          *.7*************************************************************************************** PP

                 GRAS 270 sleaklpreseerikvErellgreivnvvacegaerrerhetlekWrerleeaGFkpvplsekaakqaklllrkvksdgyrveeesgslv 359
                          sl+a+l+r+s++ri+vEr++l+r+ivn+vaceg+er+er e ++kWr+r+++aGF+++p+s++++++++ l+rk+ ++ y+++e+ g+l+
  Kalax.0059s0024.1.p 442 SLDATLARDSQDRINVERQCLARDIVNIVACEGEERIERYEVAGKWRARMMMAGFTSLPVSQSVQESIRNLIRKYCDR-YKMKEDLGALL 530
                          ****************************************************************************66.*********** PP

                 GRAS 360 lgWkdrpLvsvSaWr 374
                          +gW+d++L+++SaWr
  Kalax.0059s0024.1.p 531 FGWEDKNLIVASAWR 545
                          **************8 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS5098565.445149526IPR005202Transcription factor GRAS
PfamPF035147.4E-134176545IPR005202Transcription factor GRAS
Sequence ? help Back to Top
Protein Sequence    Length: 546 aa     Download sequence    Send to blast
MSLVRRVEPS GTSRASRNIY SVADKQRLKQ TNRSSSSNSF ETNYLLDSPM EAQPAIVGVS  60
GNELQISSAS YPLKIAATSA ATQNNFASDY MENEISDSAE FDAETMRLKL QELEALLCDN  120
NFEGCDIDQD MELDGGWDNS ICNDLLQESP KESTSSSLSI ISSEKELSPA PFRTPKQLLI  180
HCASIIAEGK LREASAMINE LRQLVSIQGD PHERIAAYMV EGLAARMAES GQCLYKALKC  240
KEPPTTDRLA AMQILFEVCP CFKFGYMAAN GVIMEAIRDE KRVHIIDFDI NQGNQYITLI  300
QTLASRKGRR PHLRLTGVDD PESVQRSVGG LKIIGLRLEQ LAEALELPFE FHAVASATSD  360
VTPDMLDHRP DEVLIVNFAF QLHHMPDESV STVNQRDQLL RKIKGLHPKL VTVVEQDVNT  420
NTSPFFPRFI EAYNYYSAVF ESLDATLARD SQDRINVERQ CLARDIVNIV ACEGEERIER  480
YEVAGKWRAR MMMAGFTSLP VSQSVQESIR NLIRKYCDRY KMKEDLGALL FGWEDKNLIV  540
ASAWR*
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
5b3g_A1e-6218254426378Protein SCARECROW
Search in ModeBase
Functional Description ? help Back to Top
Source Description
UniProtProbable transcription factor involved in plant development. {ECO:0000250}.
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_023871722.10.0scarecrow-like protein 1
RefseqXP_023871723.10.0scarecrow-like protein 1
RefseqXP_023871724.10.0scarecrow-like protein 1
RefseqXP_023871725.10.0scarecrow-like protein 1
RefseqXP_023871726.10.0scarecrow-like protein 1
SwissprotQ9SDQ30.0SCL1_ARATH; Scarecrow-like protein 1
TrEMBLA0A2N9FGS30.0A0A2N9FGS3_FAGSY; Uncharacterized protein
STRINGXP_010104285.10.0(Morus notabilis)
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT1G21450.10.0SCARECROW-like 1
Publications ? help Back to Top
  1. Ding Y, et al.
    Four distinct types of dehydration stress memory genes in Arabidopsis thaliana.
    BMC Plant Biol., 2013. 13: p. 229
    [PMID:24377444]