PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

Kalax.0059s0015.1.p

Organism

Kalanchoe marnieriana

Taxonomic ID

80907

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; Saxifragales; Crassulaceae; Kalanchoe

Family

Dof

Protein Properties

Length: 295aa MW: 31901.7 Da PI: 4.0224

Description

Dof family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
Kalax.0059s0015.1.p	genome	JGI	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	zf-Dof	118.8	2.1e-37	14	70	4	60
zf-Dof 4 kalkcprCdstntkfCyynnyslsqPryfCkaCrryWtkGGalrnvPvGggrrknkk 60 a +cprC s+ntkfCyynnyslsqPryfCk+CrryWtkGG+lrnvPvGgg+rk+++ Kalax.0059s0015.1.p 14 MAPNCPRCASSNTKFCYYNNYSLSQPRYFCKGCRRYWTKGGSLRNVPVGGGCRKSRR 70 5679**************************************************997 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
ProDom	PD007478	2.0E-22	1	61	IPR003851	Zinc finger, Dof-type
Pfam	PF02701	6.1E-32	16	70	IPR003851	Zinc finger, Dof-type
PROSITE profile	PS50884	28.584	16	70	IPR003851	Zinc finger, Dof-type
PROSITE pattern	PS01361	0	18	54	IPR003851	Zinc finger, Dof-type

Gene Ontology ? help Back to Top
GO Term	GO Category	GO Description
GO:0006355	Biological Process	regulation of transcription, DNA-templated
GO:0003677	Molecular Function	DNA binding

Sequence ? help Back to Top
Protein Sequence Length: 295 aa Download sequence Send to blast
MDRRWMMMKS SPEMAPNCPR CASSNTKFCY YNNYSLSQPR YFCKGCRRYW TKGGSLRNVP 60 VGGGCRKSRR GRSSSRPGDN TISSAYTSSR SDGGGQSGDA LVMPQHQDAA SSNRSSSGPA 120 DIDMAAVFAK FLDPISETEL RDQEETDQTG DDDYPFFELA SSLGSSNEEA GDGLLMDDSE 180 NEAGLFGQVV GAEFDPLAAV GDENLEGSYD GSFGLEYEDM FSSDQVLAAG PEAVMWPASN 240 YGTDAFCEWE QGELELPPFS GNYKQMKGGS SGNELVDDNN WTVGSCLDVT SFEV*

Regulation -- PlantRegMap ? help Back to Top
Source	Upstream Regulator	Target Gene
PlantRegMap	Retrieve	-

Annotation -- Nucleotide ? help Back to Top
Source	Hit ID	E-value	Description
GenBank	AM430517	2e-35	AM430517.1 Vitis vinifera contig VV78X165735.2, whole genome shotgun sequence.

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT3G52440.1	2e-29	Dof family protein

Link Out ? help Back to Top
Phytozome	Kalax.0059s0015.1.p