PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Kalax.0056s0037.1.p
Organism
Kalanchoe marnieriana
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; Saxifragales; Crassulaceae; Kalanchoe
Family MYB
Protein Properties Length: 334aa    MW: 36578.6 Da    PI: 7.4578
Description MYB family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Kalax.0056s0037.1.pgenomeJGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1Myb_DNA-binding48.91.5e-152067148
                         TSSS-HHHHHHHHHHHHHTTTT-HHHHHHHHTTTS-HHHHHHHHHHHT CS
      Myb_DNA-binding  1 rgrWTteEdellvdavkqlGggtWktIartmgkgRtlkqcksrwqkyl 48
                         rg W+++Ede+l  ++++ G g+W+++++  g+ R++k+c++rw +yl
  Kalax.0056s0037.1.p 20 RGLWSPDEDEKLFSYITRNGVGCWSSVPKLAGLQRCGKSCRLRWINYL 67
                         788*******************************************97 PP
2Myb_DNA-binding52.41.2e-1673116146
                          TSSS-HHHHHHHHHHHHHTTTT-HHHHHHHHTTTS-HHHHHHHHHH CS
      Myb_DNA-binding   1 rgrWTteEdellvdavkqlGggtWktIartmgkgRtlkqcksrwqk 46 
                          rg++++ E+el+v ++++lG++ W+ Ia+ m+ gRt++++k++w++
  Kalax.0056s0037.1.p  73 RGSFSQKEEELIVSLHELLGNR-WAQIAAQMP-GRTDNEIKNFWNS 116
                          899*******************.*********.***********97 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS5129417.0841567IPR017930Myb domain
Gene3DG3DSA:1.10.10.602.0E-221570IPR009057Homeodomain-like
SuperFamilySSF466896.36E-2817114IPR009057Homeodomain-like
SMARTSM007171.1E-101969IPR001005SANT/Myb domain
PfamPF002491.3E-132067IPR001005SANT/Myb domain
CDDcd001678.60E-102367No hitNo description
PROSITE profilePS5129425.88868122IPR017930Myb domain
Gene3DG3DSA:1.10.10.605.3E-2671123IPR009057Homeodomain-like
SMARTSM007172.4E-1572120IPR001005SANT/Myb domain
PfamPF002495.0E-1573117IPR001005SANT/Myb domain
CDDcd001674.07E-1175115No hitNo description
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0003677Molecular FunctionDNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 334 aa     Download sequence    Send to blast
MGRNLCSTST TTTARQRVRR GLWSPDEDEK LFSYITRNGV GCWSSVPKLA GLQRCGKSCR  60
LRWINYLRPD LKRGSFSQKE EELIVSLHEL LGNRWAQIAA QMPGRTDNEI KNFWNSCLKK  120
KLISQGIDPS THKPAASEIQ AKKRAQETSG SVKNGGEVST GDEAKFPVDE SSYYESKPLF  180
GASSLPATTQ FEIFGVGYGS NVINPFPHVT RPGFNSRPPS QFSAYAAAGL LNSERGGVRE  240
THFSDMSGSS STSNISHSYG VTQSIGQAAA ASFSWAEGGK KLETLFQLPD FIKSQEQDPS  300
PWAQNSSDDF NSYPALSLSE DLSGLDFEVF QET*
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
1a5j_A6e-27201227108B-MYB
Search in ModeBase
Functional Description ? help Back to Top
Source Description
UniProtProbable transcription factor. {ECO:0000250}.
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_007210792.15e-95transcription factor MYB86
SwissprotQ8LPH61e-70MYB86_ARATH; Transcription factor MYB86
TrEMBLA0A314Y6J42e-94A0A314Y6J4_PRUYE; Transcription factor MYB86
STRINGEMJ119912e-94(Prunus persica)
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT5G26660.19e-73myb domain protein 86