PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Kalax.0055s0139.1.p
Organism
Kalanchoe marnieriana
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; Saxifragales; Crassulaceae; Kalanchoe
Family Dof
Protein Properties Length: 383aa    MW: 41704.6 Da    PI: 7.326
Description Dof family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Kalax.0055s0139.1.pgenomeJGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1zf-Dof124.43.7e-393594261
               zf-Dof  2 kekalkcprCdstntkfCyynnyslsqPryfCkaCrryWtkGGalrnvPvGggrrknkks 61
                         +e+a kcprCds ntkfCyynnyslsqPryfCkaCrryWtkGG+lrnvPvGgg+rknk+s
  Kalax.0055s0139.1.p 35 PEQAPKCPRCDSGNTKFCYYNNYSLSQPRYFCKACRRYWTKGGTLRNVPVGGGCRKNKRS 94
                         78899*****************************************************97 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
ProDomPD0074781.0E-283393IPR003851Zinc finger, Dof-type
PfamPF027015.7E-333793IPR003851Zinc finger, Dof-type
PROSITE profilePS5088429.0033993IPR003851Zinc finger, Dof-type
PROSITE patternPS0136104177IPR003851Zinc finger, Dof-type
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0003677Molecular FunctionDNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 383 aa     Download sequence    Send to blast
MDLPRLNLQE MNTNSCEKNS QVVVAADEKK PRPQPEQAPK CPRCDSGNTK FCYYNNYSLS  60
QPRYFCKACR RYWTKGGTLR NVPVGGGCRK NKRSAKRALD SHHHLLLQSK VENVLSSAAS  120
SEQQNNNHGG NGLSNFSSPL SYDSSGTGDS LSMAFARLQK QCNSGHLGFE FDPQNSIFGH  180
HLQQHVPIFG NPVTNNLLDQ TQTQTLLQPK STNLGFLSNF FDTQAATNYN SQTCLFNYNG  240
FENAADQYPK DQSHQSHSQP LLPYEDLSLS NVAADPTKDG FNLMSSNSVK HEMCNNHNND  300
GLNDHRILWG FPWQQLGSNN NGGGSSSEND NNNVVLGSGM SNNVGNGYEA AGGAGGGGRE  360
SWSNSGLGSA PSWPNLINSA LM*
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT5G60200.12e-37TARGET OF MONOPTEROS 6