PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Kalax.0055s0095.1.p
Organism
Kalanchoe marnieriana
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; Saxifragales; Crassulaceae; Kalanchoe
Family ERF
Protein Properties Length: 424aa    MW: 47145.4 Da    PI: 4.6963
Description ERF family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Kalax.0055s0095.1.pgenomeJGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1AP261.22.4e-193584255
                  AP2  2 gykGVrwdkkrgrWvAeIrd.psengkrkrfslgkfgtaeeAakaaiaarkkleg 55
                         +y GVr+++ +grWvAeI+d      ++ r++lg+f+taeeAa+a+++a+  l+g
  Kalax.0055s0095.1.p 35 RYVGVRQRP-SGRWVAEIKDtI----QKIRVWLGTFDTAEEAARAYDEAACLLRG 84
                         79*******.7*********33....35**********************99998 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
CDDcd000184.40E-313491No hitNo description
PfamPF008473.5E-143584IPR001471AP2/ERF domain
SMARTSM003802.1E-353598IPR001471AP2/ERF domain
PROSITE profilePS5103219.9813592IPR001471AP2/ERF domain
SuperFamilySSF541711.11E-193593IPR016177DNA-binding domain
Gene3DG3DSA:3.30.730.105.5E-283591IPR001471AP2/ERF domain
PRINTSPR003672.0E-83647IPR001471AP2/ERF domain
PRINTSPR003672.0E-85874IPR001471AP2/ERF domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0003677Molecular FunctionDNA binding
GO:0003700Molecular Functiontranscription factor activity, sequence-specific DNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 424 aa     Download sequence    Send to blast
MSRKRRANEQ AVEQQAGKMC PDVFVKESPR RAPKRYVGVR QRPSGRWVAE IKDTIQKIRV  60
WLGTFDTAEE AARAYDEAAC LLRGANTRTN FWPSEPCLTT PALPSKITKL LLHRLKARDS  120
NMEPKGKTQQ LTAERNDPDF DKAAGYRDFK EKDEGGFSTA HFTDEFLNDA EDYPACDDNL  180
FINDAEDYHA CDDKLVTGGS GSAMTSYADS VPSGSLHACG TESQQTEVME HHSTCNSTSW  240
SAVETSYMES DSKPGGEGEA ETKREGIERP QVGALDFQFV DDVGKASAAE CYYSAFQIAE  300
EIGEPLMEQG GGVGDEPSML LNSVMRLMKY ERKFSASLYA FNGVTECLKL KVGAETRRGD  360
HLSNLRDACG RKKREDEDYV ARKRDEKEAI GKEAEQAMEL SEGDSDLILW SCLDLQPICF  420
VNY*
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
5wx9_A8e-14351001479Ethylene-responsive transcription factor ERF096
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT5G19790.12e-21related to AP2 11