PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | Kalax.0055s0025.1.p | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; Saxifragales; Crassulaceae; Kalanchoe
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Family | M-type_MADS | ||||||||
Protein Properties | Length: 138aa MW: 15011.3 Da PI: 9.5365 | ||||||||
Description | M-type_MADS family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | SRF-TF | 52.4 | 6.5e-17 | 12 | 61 | 1 | 49 |
S---SHHHHHHHHHHHHHHHHHHHHHHHHHHT-EEEEEEE-TTS.EEEEE CS SRF-TF 1 krienksnrqvtfskRrngilKKAeELSvLCdaevaviifsstg.klyey 49 krie+ +r++tfskRr g++KKAeELS L++ va + fs+t kl+ + Kalax.0055s0025.1.p 12 KRIEDLNKRYITFSKRRPGLFKKAEELSELTGCGVAALAFSPTAkKLHKF 61 79***************************************985256665 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
SMART | SM00432 | 7.0E-20 | 4 | 64 | IPR002100 | Transcription factor, MADS-box |
PROSITE profile | PS50066 | 19.806 | 4 | 56 | IPR002100 | Transcription factor, MADS-box |
SuperFamily | SSF55455 | 1.29E-18 | 5 | 76 | IPR002100 | Transcription factor, MADS-box |
CDD | cd00120 | 1.28E-23 | 5 | 62 | No hit | No description |
PRINTS | PR00404 | 4.9E-13 | 6 | 26 | IPR002100 | Transcription factor, MADS-box |
Pfam | PF00319 | 4.1E-18 | 13 | 61 | IPR002100 | Transcription factor, MADS-box |
PRINTS | PR00404 | 4.9E-13 | 26 | 41 | IPR002100 | Transcription factor, MADS-box |
PRINTS | PR00404 | 4.9E-13 | 41 | 62 | IPR002100 | Transcription factor, MADS-box |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0003677 | Molecular Function | DNA binding | ||||
GO:0046983 | Molecular Function | protein dimerization activity |
Sequence ? help Back to Top |
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Protein Sequence Length: 138 aa Download sequence Send to blast |
MGGTGKKKIE IKRIEDLNKR YITFSKRRPG LFKKAEELSE LTGCGVAALA FSPTAKKLHK 60 FGEMALIDRY LEDTGAGQGQ VALGWESGNQ NEVSVEAALR FLAGKNLGAI YDLGELVEMR 120 SVLGRIRECL VQHLNSG* |
Regulation -- PlantRegMap ? help Back to Top | ||||||
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Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | - |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_028102916.1 | 4e-17 | agamous-like MADS-box protein AGL29 |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT5G51870.2 | 9e-16 | AGAMOUS-like 71 |
Link Out ? help Back to Top | |
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Phytozome | Kalax.0055s0025.1.p |